Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211609g00009 ATGCATTCCAAAACTCAACCTGTTGCCTTCAGAACTCGCTCCAGAATCACCATCACCGAACCTGCCCCGGTTATCGGCCACAGTAGCTCCGACGACGACGACGACGATGAAGTCGTCGTTTATGGCGAAACTCCCCCGAAAGCTCCGCGTCCGGTTGTGTCTGAAGACAGTTCTGAAGAAAGAGAAGAAGAAGAAGAAGAAGCTGAAGATGATGATTTACAGTTTCTAGGAGAAGGACTCGATTATAATGTTTGTGATGGTGATGATGTAGAGGTGAAAAGCGAAGAAGGAGTGGAGGATTATAATGGTGGTGGTGGTGGTGGTGATGACGATGTAGAGGTGAAAAGGGAAAAATGTTGTGAAGATGGTGGTGATGGTGGAGCTGAAGGAAGCGAAGACAATTGCAAAGAGGTTGGAATGTGGAAAAGAAGAAAATTTGGGGTTGATGTTTTGATTGACCAGAGTCCCAGCCCCGAGGCTAAGAGCGTTGCTCACAGGACTCGTTCCCATTTTCCTAGAAGCAGGAAGAAGCTCAATTTGGGGACTTTTAGTCAACCAATCTGCCTTGGTGATGATGATGATGATGGAGAAGAAGAAGAACCAGAAGAACAAGAACAACAACAAGAAAGGGAGCAAGATGATGATGATGATGATGATGAAGAAGAAGAATTAGAAGAAGAGGACGATGATGATGAGTCTCTTTATGAATTAGGGGAGACTGATTTGGATGATGATGATGATGATGATGATGATGACTACAGTGAAGAGAGGGGTGGCTATGACAAAGAGCATTGTGGTGTTGGTCATCATAATGGGAGAGAAAGGTATGCTTATCTGGACAATGTGCCTATATCTGAAGTGAAATTGGCAGGGAAGAAGCGAAAGCAGAAGCGTGTTGATTTGGCTAGCATGTTGAAGGATATGGTGTTTGGCAAGGGAGAGATGCCACTGCTGGAGCATATGGAAGAAGAACCAGGTGCAATTGTGGAAGCCATGGAGGTGCCGACAGCGTTTCCTCTCAACAATGAGAAGCACCCTCCACCGGAGGAAACGTTGGATGAAATTTGGGCTGAGATGGAGAGTTGCTTCGGCCCTGATCCTCTTGATGAGGGACCGGGCTCTAATGAATTCAAATGCAGAGGTTCCAATAGGGAAAAGGAATCTCTTTTTGCATTTACAAGGAAGAAAGAAGATCATGATCTAAAAGGGCTTGGTGATGAGTTTGAGGATATTTTTCCGGATTGTGTTGCTCCTGAGAAGGATAAAGTGTCTAGCAAGTCAGGCATTGAGGGGCGAAATTCATGTGTGGATTTGCCTTTTAAGTTTACCTTTTTAGCTAAGGAAGAACCGCCGACAGAGAAGTCGGAATTTGAGAAAGAAATGGATATGATCTGGTCGGAGATGGAGCTTGGTCTTCATGTTATCCGACAAGACATTGCTTCTGCTGCTCCTCAGGGTGAAAATAATACTTATTCAGATGACGAACAATTTCTGATGGAAGATGATGACAACGCACCTCCTCTTGTTCGCTGTCGAAAAGGGAAACACTATCTTGTTCTTGATGAGGAAATTGGGCTTATATGTAGATATTGCTTGCATGTGGCATTGGAGATCCAGCATTGGTTTCCTCCTTTTGCTGAAAGTGCATATGAAAAATCAGACAGGATAGATTATTATAATGGGGATTATGTTGATCGGTCTGTCTTGGATGAGCTTGATTATCGAACTTCTCCTATTGATGATTATAACATTGGTAATCGCAAGGGGACTGTGTGGGATTTGATTCCTGGAGTGAAGACGACTATGTATCCTCATCAACGCGCAGCTTTTGAATTTATTTGGAGTAATTTAGCTGGTGGAATTAATGTTGATAACCTGAAAGAAGAAACCACTGGAAATGGATGTGTTATATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTACTTATCCAGTCTTACATGAAGTTATATCCAACATGCTCACCAATGATTATTGCTCCTAAAGGCATGCTCCTTTCATGGGAAGAGGAGTTCAAAACATGGAAAGTTGACATTCCCTTTCACAATTTGAACAATTTTGAATACTCTGGCAAAGAGAATGAAGCAGCTCGTAATCTTATCAATAAGTTTGGTCGTAATGTTTCAACTCAGACAGCAAGGTGGTATTGTCGTTTTGCTAAGTTGTATTCCTGGAAGCTTGGCAATAGCATCTTGGGAATTAGCTACAAACTGTTCGAGCTACTTACCCGGAAGGGCTGCCGCAACAAGGCCTTGAGGATGTTCCTTCTTGGACAGCCCAGTTTGTTAGTTCTTGATGAAGGGCACACTCCCCGCAATAAGAAATCTTTTGTATGGAAATCTGTCTCTGAAATTGTAACAAAGAGACGCATCATCCTTACCGGAACTCCCTTCCAAAATAATTTTAAGGAGCTATACAACACACTCTGCTTGGCAAGGCCTAAATTTGCTGAATGGAATCCAAGAAATGAACATGGAGGGAAATGGCGACATCTTGTCAGTTCATATGGAAAAGTTACTGATGCTAGTAGAAGATTCAAGATTTTGAAAGAAATCCGGAACATGCTTCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGAGAGTCTTCCAGGGTTGAGGCAGTTGGTAGTCATGTTGAAACCAACCCAGTTGCAGGAGGAATTGCTTGAAGAGATTCAGAAGAGAATTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAACAGCATTTCATCCTTCTCTTTGCATGCTATCTGAAGACAAGGAGAAGTTACAAAAGCTTAGATTGAACCCCAAGGGAAGTGCCAAAACAAACTTTTTAATGGAACTTATCAGGATCAGTGTGATTTTCAATGAAAAAGTTTTGGTTTTTAGCCAATTCATTGCTCCTTTGAAGCTTCTAATGACCCAGCTTAAGCAACAATTTAGTTGGACAGAAGGAAGAGAGGTGTTACAAATGCATGGAAAACAAGAAGCAAAGCTTCGTCTGGCTTTAATGAAAACTTTCAATAATCCAAACAGCAAAGTAAGGGTAATGCTGGCATCAACCAAGGCTTGTTATGAAGGTATCTGTTTAGTAGGTGCCTCGAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCCTCGGTTGAGAGGCAAGCGATAAGCCGTGCTTATAGGATCGGCCAAAAGAAGCTTGTGTACACTTACCATTTGATCACTAAGGGGACAAAGGACGAGAAAAAATGTTGTTATCAAGCTATGAAGGATCAGTTGTCGGAGTTGGTGTTCTTTCATTCTGAAGGCGGGGCTCAAAATAATCAGCTCATTTCGCCTGCTGAATTGGAAGATGAAATTCTGGAGCAGATCATTCAGCAAGAAAAGTTTAGACACATAATTGAAAAAGTAGCCATTAAGAATACAAATCTAATTTGA 3450 0.4217 MHSKTQPVAFRTRSRITITEPAPVIGHSSSDDDDDDEVVVYGETPPKAPRPVVSEDSSEEREEEEEEAEDDDLQFLGEGLDYNVCDGDDVEVKSEEGVEDYNGGGGGGDDDVEVKREKCCEDGGDGGAEGSEDNCKEVGMWKRRKFGVDVLIDQSPSPEAKSVAHRTRSHFPRSRKKLNLGTFSQPICLGDDDDDGEEEEPEEQEQQQEREQDDDDDDDEEEELEEEDDDDESLYELGETDLDDDDDDDDDDYSEERGGYDKEHCGVGHHNGRERYAYLDNVPISEVKLAGKKRKQKRVDLASMLKDMVFGKGEMPLLEHMEEEPGAIVEAMEVPTAFPLNNEKHPPPEETLDEIWAEMESCFGPDPLDEGPGSNEFKCRGSNREKESLFAFTRKKEDHDLKGLGDEFEDIFPDCVAPEKDKVSSKSGIEGRNSCVDLPFKFTFLAKEEPPTEKSEFEKEMDMIWSEMELGLHVIRQDIASAAPQGENNTYSDDEQFLMEDDDNAPPLVRCRKGKHYLVLDEEIGLICRYCLHVALEIQHWFPPFAESAYEKSDRIDYYNGDYVDRSVLDELDYRTSPIDDYNIGNRKGTVWDLIPGVKTTMYPHQRAAFEFIWSNLAGGINVDNLKEETTGNGCVISHAPGTGKTRLAIVLIQSYMKLYPTCSPMIIAPKGMLLSWEEEFKTWKVDIPFHNLNNFEYSGKENEAARNLINKFGRNVSTQTARWYCRFAKLYSWKLGNSILGISYKLFELLTRKGCRNKALRMFLLGQPSLLVLDEGHTPRNKKSFVWKSVSEIVTKRRIILTGTPFQNNFKELYNTLCLARPKFAEWNPRNEHGGKWRHLVSSYGKVTDASRRFKILKEIRNMLQPFVHVYKGTILQESLPGLRQLVVMLKPTQLQEELLEEIQKRIDNVLKLEYEESVTAFHPSLCMLSEDKEKLQKLRLNPKGSAKTNFLMELIRISVIFNEKVLVFSQFIAPLKLLMTQLKQQFSWTEGREVLQMHGKQEAKLRLALMKTFNNPNSKVRVMLASTKACYEGICLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKLVYTYHLITKGTKDEKKCCYQAMKDQLSELVFFHSEGGAQNNQLISPAELEDEILEQIIQQEKFRHIIEKVAIKNTNLI 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211609g00009 1149 MobiDBLite consensus disorder prediction 1 86 - -
Stsc211609g00009 1149 MobiDBLite consensus disorder prediction 153 272 - -
Stsc211609g00009 1149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 955 1149 IPR001650 -
Stsc211609g00009 1149 Gene3D - 583 864 IPR038718 -
Stsc211609g00009 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 826 IPR027417 -
Stsc211609g00009 1149 Pfam SNF2-related domain 610 936 IPR000330 GO:0005524|GO:0140658
Stsc211609g00009 1149 MobiDBLite consensus disorder prediction 190 256 - -
Stsc211609g00009 1149 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 58 1141 IPR044567 GO:0080188
Stsc211609g00009 1149 MobiDBLite consensus disorder prediction 94 113 - -
Stsc211609g00009 1149 MobiDBLite consensus disorder prediction 58 76 - -
Stsc211609g00009 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 1122 IPR027417 -
Stsc211609g00009 1149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 824 IPR014001 -
Stsc211609g00009 1149 SMART ultradead3 598 839 IPR014001 -
Stsc211609g00009 1149 MobiDBLite consensus disorder prediction 257 272 - -
Stsc211609g00009 1149 SMART helicmild6 978 1067 IPR001650 -
Stsc211609g00009 1149 Pfam Helicase conserved C-terminal domain 949 1067 IPR001650 -
Stsc211609g00009 1149 CDD SF2_C_SNF 947 1078 - -
Stsc211609g00009 1149 Gene3D - 882 1146 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211609g00009 Stsc-Chr211609 29810 34055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211609g00009 965 1122 RAD5 or RAD16-like Gene Family AT5G43530 37.342 2.91e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211609g00009 SNF2_N 7.2e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211609g00009 K10875 - cave:132176595 712.22