Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211609g00003 ATGGAGGAACGCTATGAGCCAATCAAGGACCTTGGTTCTGGAAATTTCGGAGTAGCTAAATTGGCCAAACACAAGATAACAGGGGAGCTTGTTGCTGTTAAATACATTCAAAGGGGTAAAAAGATTGATGAGAATGTTCAGAGGGAGATCATTAACCACCGATCTCTAAGGCACCCTAACATTATCAGGTTCAAAGAGGTGTTCCTGACCCCAACTCATTTAGCTATTGTGCTGGAATATGCTGCTGGTGGTGAACTCTTTCAGAGAATTTGCACAGCTGGTCGATTTAGCGAAGATGAGGCAAGATTTTTCTTCCAGCAACTGATATCTGGAGTTAGCTACTGTCATTCAATGCAAATTTGTCATAGAGATCTGAAACTGGAAAACACTCTCTTGGATGGTAATCCGGCGCCTCGACTTAAGATTTGTGACTTCGGTTTCTCCAAGTCTGCATTGCTGCATTCCCAGCCTAAGTCAACAGTTGGAACACCAGCATATATTGCTCCAGAGGTTTTGTCTAGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGGGTGACTCTGTATGTAATGTTAGTTGGAGCATATCCATTTGAAGATCCAGAAGATCCTAGAGATTTCAGAAAGACTATTGGGAGAATAATGAGCGTGCAATATTCTATACCAGATTATGTGCGTCTTTCTCCAGAGTGTAGGCATCTTCTCACTAGAATTTTTGTTGCCAATCCAGCCAAGAGGATTACTATGGCGGAGATAAAGAAGCATGCATGGTTCTTGAAGAACTTGCCTAGAGAGATAATTGAGGCTGATAGAAGAATCAATGAAGAAAGAGAGAAGGAGGAGGAAGAGGAGAAGCAACCAAGCCAAAGTGTTGAAGAAATCATGCGCATAGTCAAAGAAGCAAGAAAACCCAGTCCAGGATCAAAATTAGATTCTGAGGATGTTGAAGCTAAAGAGGGAATTCTTTTTAGTGGAGACTCTGTGGAACCTCATTCGTCCCTAAATTAA 1017 0.4179 MEERYEPIKDLGSGNFGVAKLAKHKITGELVAVKYIQRGKKIDENVQREIINHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFQRICTAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRDFRKTIGRIMSVQYSIPDYVRLSPECRHLLTRIFVANPAKRITMAEIKKHAWFLKNLPREIIEADRRINEEREKEEEEEKQPSQSVEEIMRIVKEARKPSPGSKLDSEDVEAKEGILFSGDSVEPHSSLN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211609g00003 338 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211609g00003 338 PANTHER SERINE/THREONINE KINASE 3 292 - -
Stsc211609g00003 338 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Stsc211609g00003 338 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Stsc211609g00003 338 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Stsc211609g00003 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Stsc211609g00003 338 Coils Coil 262 289 - -
Stsc211609g00003 338 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211609g00003 338 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211609g00003 338 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Stsc211609g00003 338 CDD STKc_SnRK2 4 260 - -
Stsc211609g00003 338 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Stsc211609g00003 338 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Stsc211609g00003 338 MobiDBLite consensus disorder prediction 302 338 - -
Stsc211609g00003 338 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211609g00003 Stsc-Chr211609 6589 8700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211609g00003 4 271 CBL-interacting serine-threonine protein kinases AT4G24400 44.765 2.63e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc211609g00003 Pkinase 1.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211609g00003 K14498 - gmx:100817713 536.954