Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211608g00016 ATGGTGAATTTCAGCGGAGACCCTCACAGTTACTCTCAACCTCAAACCCAAGACAACAACCACTTCAACCACCCTAACACCAACTACAACTGCCACAACCCCGTCAATGCCTTCCCCAACCCCAACCCAATCGATTCTCCTGCTTCTGGCTTTGCTCCTCCTAACCATTCACGTCCACCCCGCAAGCGACCTTGGACTTCACCAGATCAAGCAGATAGCGGTCATGTAAAAGTTTATGTTGCACCAGTTCCAAAAACAGCTACCGAGGCTGATGTCCGCCTTGTGTTTGAAGGGCATGGGACTATTGTTGAGGTCGTTCTTTTAAGAGATAAGAGAACTGGTGGACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAGATGAAGCTGAGAAAGCCATTAAGGCTTTAAGCAATAAGTATACATTTCCTGGGGAACCATCTCCTGTTGTTGTCAGATATGCTGATCGGGAACGTGAACGGCTTGGGGTTCGAGCATTTGGCCGAAACTTGGAAAAGAAAGATCCTTCAGAAGAGGTTGTTGATAAAGTATTTGTTAGTTGCATCAACAAAGAAGCTTCGAAACAAGAAATAGAAGAAATATTTTCTGCTTATGGAAATATAGAAGATGTCTTCTTGCACAGTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCAATGGCTGCAATCAAAGGGCTGAACAACACATTCACGATGAAAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCAAAGAAACCAAAGACTGGAGATCCAAGGGGCAACTTTTTAAATGGGAATGCAAATTTTGGTCCCTTCCCTCAGGAATCAACAGTTTGGCCAGTGCCAAATTTCGGTGATCCCAATACTAGAGGAAGTATTATGCCTATGGCCCCACATCATTCTGCAATTGCACACCAACAAGTTTCTTCTCATATGCAGAATTGGGAACCTGGGGCTAACATGATACCACAGCCATTTCCTATCCAACAACCACATTCTCAATTGACTTCAATGCCTTTGCAGTGCAATCAAGCTCCGAAGATGTCTTCTCAACCATTTTATCCTGAGGTGCAGAGACAGTTGCATCCAACAGATTTGTCGGTGCAAAATATAGAGCAGCAGCCAAGTTCACAGACACCTACTCAGAGTGTAAGCAACTCTAATACAGTTGCTGGCAGTACTTCACCTGATGTGCCTACAAGCCCTGTAGATGAAGATTTTCCAGAGTGTGATTGGAGTGAGCACTACTGCCCTGATGGTCATACTTACTACTACAACTGCGTCACTTGTGAAAGCAAATGGGAAAAACCTGAGGAGTATGCTATTTATGAGAGAGGATCTCAGAAGCAGCAAAAGCATGAGGATCATAAAGAGTCACAGAAGTTGCCGGAGCATGAGAACCATAAAGAGTCACAGAAGCCTCAAGAGCATGAGGATCATACAGATTCACAGAAGCTGCAGCAGCATAACGATCATAAAGATTTGCAGAAGCTGCAGGAGCATGACGATCATAAAGATTTGCAGAGGCTGCAAGAGCACGAGGATCCTAAAGATTTAGAGAGGCTGCAAGAGCACAAGGATTCTAAAGATTTGCAGAGGCTGCAAGAGCACGAGGATCATAAAGAATCTCAGATGCAGCAAGAGCACGAGGATCATAAAGAATCTCAGATGCAGCAAGAGCACGAGGATCATAAAGAATCACAGATGCAGCAAGAGCGCAAGGATCATGAAGTATCAAAGAAGCAGCAAGAGTACGAGGATCATAAAGAATCACAGAAGCAGCAAGTGAATGAGGATAATAAAGAATCACAGAAGCAGCAAGAGCTTGAAGATCATAAAGAGCCACAGAAGCAGCAAGTGAATGAGGATAATAAAGAATCACAGAAGCAGCAAGTGAACGAGGATAAAGAAGAATCACAGAAGCAGCAAGTGAATGAGGATCATAAAGAATCACAGCAGCAGCAGCAAGTGAATGAGGATAATAAAGAAGAATCACAGAAGCAGCAAGTGAATGATGATAATAAAGAATCACAGCAGCAGCAAGAGCTTGAGGATCATAAAGAATCACAGAAGCAGCAAGTGAATGAGAATCATAAAGAATCACAGAAGCAGCAAGAGCTTGAGGATTATAAGGAACCACAGAAGCAACAAGAGAATGAGGATCATAAAGAATCACAGAAGCAGCAAGAGCTTGAGGATGATAGCTGTCTTCTGTCACGATTATCATTATCCGCCTCTGTACAAGTTTCTCAAAGCCAAAAGGAAAATAATGATCAAGTGCCGTCAGAAGCAAGTCTTGTTGAACAGGTGTGA 2331 0.4299 MVNFSGDPHSYSQPQTQDNNHFNHPNTNYNCHNPVNAFPNPNPIDSPASGFAPPNHSRPPRKRPWTSPDQADSGHVKVYVAPVPKTATEADVRLVFEGHGTIVEVVLLRDKRTGGRQGSCFVKYATLDEAEKAIKALSNKYTFPGEPSPVVVRYADRERERLGVRAFGRNLEKKDPSEEVVDKVFVSCINKEASKQEIEEIFSAYGNIEDVFLHSRGYAFVKFSNREMAMAAIKGLNNTFTMKGCDHPLIVRFADPKKPKTGDPRGNFLNGNANFGPFPQESTVWPVPNFGDPNTRGSIMPMAPHHSAIAHQQVSSHMQNWEPGANMIPQPFPIQQPHSQLTSMPLQCNQAPKMSSQPFYPEVQRQLHPTDLSVQNIEQQPSSQTPTQSVSNSNTVAGSTSPDVPTSPVDEDFPECDWSEHYCPDGHTYYYNCVTCESKWEKPEEYAIYERGSQKQQKHEDHKESQKLPEHENHKESQKPQEHEDHTDSQKLQQHNDHKDLQKLQEHDDHKDLQRLQEHEDPKDLERLQEHKDSKDLQRLQEHEDHKESQMQQEHEDHKESQMQQEHEDHKESQMQQERKDHEVSKKQQEYEDHKESQKQQVNEDNKESQKQQELEDHKEPQKQQVNEDNKESQKQQVNEDKEESQKQQVNEDHKESQQQQQVNEDNKEESQKQQVNDDNKESQQQQELEDHKESQKQQVNENHKESQKQQELEDYKEPQKQQENEDHKESQKQQELEDDSCLLSRLSLSASVQVSQSQKENNDQVPSEASLVEQV 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211608g00016 776 SUPERFAMILY WW domain 417 448 IPR036020 GO:0005515
Stsc211608g00016 776 SMART rrm1_1 77 153 IPR000504 GO:0003723
Stsc211608g00016 776 SMART rrm1_1 183 252 IPR000504 GO:0003723
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 745 776 - -
Stsc211608g00016 776 Coils Coil 537 557 - -
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 1 73 - -
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 451 740 - -
Stsc211608g00016 776 ProSiteProfiles WW/rsp5/WWP domain profile. 418 445 IPR001202 GO:0005515
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 451 776 - -
Stsc211608g00016 776 Coils Coil 588 612 - -
Stsc211608g00016 776 Gene3D - 170 262 IPR012677 -
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 1 43 - -
Stsc211608g00016 776 Gene3D - 398 470 - -
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 376 406 - -
Stsc211608g00016 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 256 IPR000504 GO:0003723
Stsc211608g00016 776 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 65 263 - -
Stsc211608g00016 776 Gene3D - 66 163 IPR012677 -
Stsc211608g00016 776 Pfam WW domain 416 443 IPR001202 GO:0005515
Stsc211608g00016 776 CDD WW 416 445 IPR001202 GO:0005515
Stsc211608g00016 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
Stsc211608g00016 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 241 IPR000504 GO:0003723
Stsc211608g00016 776 MobiDBLite consensus disorder prediction 376 412 - -
Stsc211608g00016 776 SMART ww_5 413 445 IPR001202 GO:0005515
Stsc211608g00016 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 157 IPR000504 GO:0003723
Stsc211608g00016 776 Coils Coil 628 660 - -
Stsc211608g00016 776 SUPERFAMILY RNA-binding domain, RBD 52 164 IPR035979 GO:0003676
Stsc211608g00016 776 SUPERFAMILY RNA-binding domain, RBD 178 266 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211608g00016 Stsc-Chr211608 75445 81428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211608g00016 78 257 Eukaryotic Initiation Factors Gene Family AT3G16380 28.788 9.22e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211608g00016 K13207 - gmx:100776162 613.609