Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211608g00007 ATGGATGCGAAGGATATACTGGGTTTGCCGAAGAACTCATTCCCAGCTTTGGAGAAGAAATCTCGTCCTCACAAAGAGTCTCACAGAAAGCCCGATGGCATTTCCCGCGAGGTTTATGCTCTCACTGGTGGACTCCCTCCTCTTATGCCTTCCCTTGATTCCTCTCAATTGAAGAAAAAACCTCCCTCTCACGAAAAGATCACTTGGCAATGGCTTCCTTTCACCAACTCAGCTCGTAAAGATAATCTTCAACTTTACCATTGGGTTCGAGTGGTGAATGGTGTTCCACCTACGGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGATGTTGTTAAATACACGGACGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAGGAGGAGACAAATCAACTATTTGACTTGTGTGAGAGGTTTGATCTACGATTTATTGTAATAGCTGATAGGTTTCCATCATCTCGTACTATAGAGGAATTAAAGGATCGATATTATAGCGTATCCCGGGCTATATTGATTGCTAGAGCTTCATCTTCTGGGGATGTTGCTACCCATCCACTTGTTAAGGAACCATATAATGTTACACAAGAGATTGAACGAAAACGAGCACTATCCATGGTCCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAGGAGGTTGTTGTTGAAGCAAAACGGATAGCTGAGTTACGTATGCCTGCTAAGGCTGTCGAAGAGTCCCAGTTGGCTGCATCAAATGCTGTTCCAGAAGTTACAGGGAGGGCTGTCCCTGGTGAAACTGCATCTCCATCAAATAATGCACAACTTCCACCATTCACGTTACCTGATAATGCATCTACTATAGCTTCTCTTCGCATACTTCGTGTATATCTGAGAACGTATGCACTTGACCAAATGGTGCAAGCTACAACATCATCTGCTGGACCACGGACTGTCAAACGGATTGAACAAACTTTGCTAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACTAAAGCTGTATGTGCTGAGCATCTTGAACTAAGAAAAGAAATGTTAACTTTGCTGAATCTTCAGAAACAGGTGCAATACAAAGAGGCTGAAGGTTCGCCTTTTTGTGATGGATCATACAATGAAGCACCAGGAACACCAAAGGACTGGACATTTATTCCAGACTCCATGAATTTCGGAGGGGAAAGGGTTAGCAAAAAGGACCAAAAGCGCAAGGGACATGGGCATCCATCGTCAGCAGGTCATAAAAGACCTAGAAAAAAGGCCTCGGAGTTCTAG 1287 0.4382 MDAKDILGLPKNSFPALEKKSRPHKESHRKPDGISREVYALTGGLPPLMPSLDSSQLKKKPPSHEKITWQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYDKYLTDPMWTKEETNQLFDLCERFDLRFIVIADRFPSSRTIEELKDRYYSVSRAILIARASSSGDVATHPLVKEPYNVTQEIERKRALSMVLSQTRQQERRDEEVVVEAKRIAELRMPAKAVEESQLAASNAVPEVTGRAVPGETASPSNNAQLPPFTLPDNASTIASLRILRVYLRTYALDQMVQATTSSAGPRTVKRIEQTLLDLGVNLKPRVPTKAVCAEHLELRKEMLTLLNLQKQVQYKEAEGSPFCDGSYNEAPGTPKDWTFIPDSMNFGGERVSKKDQKRKGHGHPSSAGHKRPRKKASEF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211608g00007 428 SMART sant 125 174 IPR001005 -
Stsc211608g00007 428 MobiDBLite consensus disorder prediction 1 36 - -
Stsc211608g00007 428 Gene3D - 98 185 - -
Stsc211608g00007 428 MobiDBLite consensus disorder prediction 405 419 - -
Stsc211608g00007 428 CDD SANT_DMAP1_like 129 171 - -
Stsc211608g00007 428 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
Stsc211608g00007 428 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 419 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Stsc211608g00007 428 MobiDBLite consensus disorder prediction 383 428 - -
Stsc211608g00007 428 MobiDBLite consensus disorder prediction 17 35 - -
Stsc211608g00007 428 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Stsc211608g00007 428 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211608g00007 Stsc-Chr211608 42667 46787 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc211608g00007 SANT_DAMP1_like 1.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211608g00007 K11324 - gmx:100818926 669.848