Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211608g00005 ATGGAAGGTAAGAAGAATAACGTAAAGAAATTAGGATCAGGGTGTATAGAAAGGAGTAGAGAAGAAGAAGAAGAGAATGATATAGGAGGTATGAATATGATAAGGAAAGGTCCATGGAGCGTTGAAGAAGACATGATTCTTAGCAATTACGTGGCCACACACGGTCATGGTCGCTGGAACTCCCTCGCCCGCTCTGCAGGGTTAAAGAGGTCCGGCAAAAGTTGCAGGTTGAGATGGCTAAACTATCTTCGTCCCGATGTTCGCCGTGGAAACATCACCCTCCAGGAACAGATCACCATTCTTGATCTTCATTCACGCTGGGGCAATAGGTGGTCAAAAATCGCAGAGCACTTGCCGGGGAGAACAGACAATGAGATCAAGAACTATTGGAGGACCAGAGTGAGTAAGCAGGCAAAGCAACTCAACTGTGATGTCAATAGCAAAAAATTCAGGGACGCTTTGCGTTACGTTTGGATGCCCCTCTTGCGAGAGCGACTTCAATCGTCGTCCTCGCAAATGGAGCATCCAAACCCAACTCAACCCTACTCTGACTCATCATCATCACAACAATTTAGTTGTGAATCTGATCAACAAGTAGTGGTGCATAGTAGTGTTGTTGAAGATGATGAGCCGGGAATATGCCCCAATAAGGAAATGTTTGAATATACCAACATACCCTTGGGGCTGGGGGAAGATGCTATTGGTAGTGGGGACTTAATGCTGGAGAGTTTGTGCAACAACAACCATGACAACATATATGGCTTCTTCTATCACGACTTTGATGTCATGACCTTGGAATAA 801 0.4519 MEGKKNNVKKLGSGCIERSREEEEENDIGGMNMIRKGPWSVEEDMILSNYVATHGHGRWNSLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVSKQAKQLNCDVNSKKFRDALRYVWMPLLRERLQSSSSQMEHPNPTQPYSDSSSSQQFSCESDQQVVVHSSVVEDDEPGICPNKEMFEYTNIPLGLGEDAIGSGDLMLESLCNNNHDNIYGFFYHDFDVMTLE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211608g00005 266 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Stsc211608g00005 266 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Stsc211608g00005 266 FunFam MYB transcription factor 93 156 - -
Stsc211608g00005 266 FunFam Myb transcription factor 36 88 - -
Stsc211608g00005 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Stsc211608g00005 266 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Stsc211608g00005 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Stsc211608g00005 266 SMART sant 35 85 IPR001005 -
Stsc211608g00005 266 SMART sant 88 136 IPR001005 -
Stsc211608g00005 266 CDD SANT 93 132 IPR001005 -
Stsc211608g00005 266 MobiDBLite consensus disorder prediction 1 26 - -
Stsc211608g00005 266 Gene3D - 93 137 - -
Stsc211608g00005 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 33 195 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc211608g00005 266 MobiDBLite consensus disorder prediction 168 189 - -
Stsc211608g00005 266 CDD SANT 38 83 IPR001005 -
Stsc211608g00005 266 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Stsc211608g00005 266 SUPERFAMILY Homeodomain-like 35 130 IPR009057 -
Stsc211608g00005 266 Gene3D - 36 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211608g00005 Stsc-Chr211608 30183 31499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211608g00005 34 181 MYB Transcription Factor Family AT1G48000 69.595 5.52e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211608g00005 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211608g00005 K09422 - gmx:100797220 254.603