Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211606g00006 ATGCTCGCCCCCTCTAAGTCCGCTCCTGCTAGGAGTGATGATGATGTTACATCTTCTGTGGAAGACCCTGAGGAAATGCAGCAATGGCTGGAACTTGAAGCAAAAGCTATGAAGGCCAACCGAGAAGCAGCTTTTGCAAACCCATATGAAGTCACTAGAAACGTCACAAATATCATTTCCCAAGACGTAGCTGGGTACAACACCACAAGGAGGAGCTTGAGAGGGAAAAAGGCAAAACTTGGGTGCAGTGCAAGCAACCCCATTGATAGATGCTGGAGATGCGACCCTAATTGGGAAAAGAATCGCAAAAAGCTTGCAACTTGTGTTATGGGTTTCGGAAGAAACACCATTGGAGGAATGAATGGTGAGTTTTACGTTGTGACTGATCCCTCAGATAATGACCTTGTTGATCCAAAACCAGGAACCCTAAGATACGCAGTTACAAGGGATAGACCCTTGTGGATCATCTTTTCACGTAACATGATCATTACCCTGAAGCAAGAGCTGTTGGTTAACAGTGATAAGACCATTGATGGAAGAGGAGCTGATATCCACGTGTGTAGGGGACGTGGCATCACAGTTAACTTTGCAAGAAACGTGATCATCCATGGAATCAAGATTTATGATATTGTCCACGGTAATGGTGGGCTTATTAGGTATCGTGAGGGAGAGAAAGGTATTCATAGGAGGACACGTAGTGATGGTGATGGAATCAGCATTTTTGGTTCTAGCGATGTTTGGGTTGACCATGTTTCCATGAGAAACTGTGAGGATGGTCTCATTGATGCTATTAGTAAATCTACTGCTATTACCATCTCCAATTCCCATTTTACAGACCATGATAAGGTGATGCTTTTTGGTGCTGATGATGGCGAAGCGGGCGATAAAATAATGCAAGTCACGGTGGCCTTTAACCACTTTGGTAAAAGATTAGTTCAGAGAATGCCAAGGGGCAGATTTGGATTTTTCCATTTGGTAAATAATGACTATACTCATTGGGAAAAGTATGCTATTGGGGGTAGCATGCATCCCATCTTTATTAGTGAGGGTAATCGATTCATGGCTTCTAATAACTCCTATACTAAACAGGTAACAAATAAGATAGGTATGCTCAGAAATCCAGAGTTATGGCAATGGAAATCAATCAATGATGAGTTTGTGAATGGAGCATTTTTTGTAGAATCTGGACCTGATCTAGTACTAAGCCAACTTTTCAAAGCTCAAGACATCTTGAAAGCAGTTCCTGGCAGATTTGCCAGCTCCCTAACTGAATCTGCTGGTGCCCTTAGATGTAGGTATGGTCGACCTTGTTAA 1314 0.4277 MLAPSKSAPARSDDDVTSSVEDPEEMQQWLELEAKAMKANREAAFANPYEVTRNVTNIISQDVAGYNTTRRSLRGKKAKLGCSASNPIDRCWRCDPNWEKNRKKLATCVMGFGRNTIGGMNGEFYVVTDPSDNDLVDPKPGTLRYAVTRDRPLWIIFSRNMIITLKQELLVNSDKTIDGRGADIHVCRGRGITVNFARNVIIHGIKIYDIVHGNGGLIRYREGEKGIHRRTRSDGDGISIFGSSDVWVDHVSMRNCEDGLIDAISKSTAITISNSHFTDHDKVMLFGADDGEAGDKIMQVTVAFNHFGKRLVQRMPRGRFGFFHLVNNDYTHWEKYAIGGSMHPIFISEGNRFMASNNSYTKQVTNKIGMLRNPELWQWKSINDEFVNGAFFVESGPDLVLSQLFKAQDILKAVPGRFASSLTESAGALRCRYGRPC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Stsc211606g00006 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Stsc211606g00006 437 PANTHER PECTATE LYASE 18-RELATED 46 435 IPR045032 GO:0030570
Stsc211606g00006 437 Gene3D - 85 430 IPR012334 -
Stsc211606g00006 437 SMART amb_all 160 359 IPR002022 -
Stsc211606g00006 437 Pfam Pectate lyase 167 353 IPR002022 -
Stsc211606g00006 437 SUPERFAMILY Pectin lyase-like 63 431 IPR011050 -
Stsc211606g00006 437 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211606g00006 Stsc-Chr211606 74128 79046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211606g00006 29 437 Polysaccharide Lyase AT1G14420 53.132 2.50e-154 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211606g00006 K01728 - gmx:100796307 520.39