Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211604g00001 ATGAGAAAAGAAGTTGAAGATTTTATTGCATCAACAAATGATATTCCTAAAGCTCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTCTTACTATGTGATACTTGTGATGCCGAGTATCATACATATTGCCTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGCCCTTCGTGTGTTGATGGTAAACATGCCACTCAAGATGCCACAAATCATGCACAGATTATTGGCAAACGTCGAAGTAAGAAGTTCCAGGGAGAAGTTCATTCTCTTTACTTGGATGCACTAACTCATTTATCTGCTATAATGGAAGAAAAAGAATACTGGGAGTACAGTGTGGGCGAGAGAACGTTCCTTCTTAAGTTTTTGTGTGATGAGTTGCTTAACTCTTCGCTGATACGCCAGCACCTTGAGCAATGTGCGGATTTATCTGCTGAGTTACACCAAAGATTGCGTTCTCTCTCTGCAGAATGGAAAAGCCTGAAAACTAAAGAAGATATCTTATCCTCAAAAGCTGCAAAAGTTGTTACATGCATGTCAAATACCACTGGAGAAGTTGGTTCTAAGGAAGGGCTCACAGCTGTGGTCTCAGGTACTGGTAAATGTCTGGGGCAACCACACAATGTAATTGACAGTCCTAATAATTTTGGGGTATCTGTTGATAGTTTGCAGTCAGAAGAAGTTACTAAAGAGAAGTATAGGCTCAATGGCGTTGACAAAAGTGTATCTCTGACAAAGTCAGATTCTGAAAACCAACACTTGAATTCCATAGATGTAGAGGGACAACTTAGGAATGTCTCTGCAGCAGTGGCTTCCCAGTGTACAGATAAATCCACAAAATCTTTTCTTTCTTCAAGTCATTTGCCTCATGAGCAAAATGGCACTAGTGGAGCAGCTCATATCCAGGTTAATCACCAGAAATCTGATGTGAATGACGTATCTACTCCTGTTGATGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGAGTGATATTTCAAGATTAGAAGACTCCATTGCTGATGTCGGATCAAAGCTGCTGAAGCTCTCGATTCGTCGAGAATTTTTGGGAATTGACTCCATTGGTCGCCTGTATTATGCTTCAGCTGTACGCAGAGGTCGTTTAGTCGTCGATGCAAGTGCTGCAGTGCTGCATGGAAGACAAATGACAGTTAGCAGTGATTCTGTGGACAGGTTTTCTTCTATCAAGCATTATGTACTATCCGACAAGGATAAGATCTTAGGGTTGCAGAAGGACTTACCTTGTTTAATGTCACAACCAAGTGATGGTTCGGGCATTAGTTCTTCATGGGTTGCTTATGAAACCGATGCAGAAATTGAAGAGCTTTTACGTTGGCTGAAGGACAATGACCCTAAAGAAAAAGAACTGAAAGATTCTATTATGATGTGGCCAAAATCAAGAGCTCAGGAGTTTCTTAATTCACCGACTGAAGGACAGGTTGAGGAACAAGGGCCTTCTCCTACACCAAGAAATAAGGAGAACACAATATCTAATTCTCTGGTTACAAAGGCGACATCTTTGCTGGAAAAGAACTATGGTCCCTTCTTTGAGTGGGATGCCACTGACGTGGCAAAGAAGCGTAGTAAAAAGGCCAGAACAAATAATGATGAGAAGTTGTATAGGTGTGAATGCCTAGAACCGATATGGCCATCTAGGAAACACTGCATGTCTTGCCACAGAACTCTTTNNNNNNNNNNGTGA 1758 0.4164 MRKEVEDFIASTNDIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDATNHAQIIGKRRSKKFQGEVHSLYLDALTHLSAIMEEKEYWEYSVGERTFLLKFLCDELLNSSLIRQHLEQCADLSAELHQRLRSLSAEWKSLKTKEDILSSKAAKVVTCMSNTTGEVGSKEGLTAVVSGTGKCLGQPHNVIDSPNNFGVSVDSLQSEEVTKEKYRLNGVDKSVSLTKSDSENQHLNSIDVEGQLRNVSAAVASQCTDKSTKSFLSSSHLPHEQNGTSGAAHIQVNHQKSDVNDVSTPVDESEPYHLELNAIKSDISRLEDSIADVGSKLLKLSIRREFLGIDSIGRLYYASAVRRGRLVVDASAAVLHGRQMTVSSDSVDRFSSIKHYVLSDKDKILGLQKDLPCLMSQPSDGSGISSSWVAYETDAEIEELLRWLKDNDPKEKELKDSIMMWPKSRAQEFLNSPTEGQVEEQGPSPTPRNKENTISNSLVTKATSLLEKNYGPFFEWDATDVAKKRSKKARTNNDEKLYRCECLEPIWPSRKHCMSCHRTLXXXX 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211604g00001 585 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Stsc211604g00001 585 PANTHER OS02G0192300 PROTEIN 2 581 - -
Stsc211604g00001 585 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Stsc211604g00001 585 MobiDBLite consensus disorder prediction 291 314 - -
Stsc211604g00001 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Stsc211604g00001 585 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 106 148 IPR028942 -
Stsc211604g00001 585 SUPERFAMILY FYVE/PHD zinc finger 11 74 IPR011011 -
Stsc211604g00001 585 Pfam PHD-finger 24 70 IPR019787 -
Stsc211604g00001 585 SMART PHD_3 24 70 IPR001965 -
Stsc211604g00001 585 MobiDBLite consensus disorder prediction 490 513 - -
Stsc211604g00001 585 CDD PHD1_Lid2p_like 24 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211604g00001 Stsc-Chr211604 11822 16781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211604g00001 1 581 C2H2 Transcription Factor Family AT3G01460 38.397 4.12e-107 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211604g00001 PHD 2.9e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211604g00001 K22768 - gmx:100820223 824.313