Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211603g00006 ATGGGAAGGTCTCCATGCTGCGATGAAAATGGCCTAAAGAAAGGGCCATGGACTCCTGAAGAAGATCAAAAGCTAGTCAATCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGTTAGCAGGTCTTAATAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACTAATTATTTAAGGCCAGACATTAAGAGGGGCAAATTCTCTCAAGAAGAGGAGCAAACTATTCTGCATCTACATTCAATTCTTGGAAATAAATGGTCAGCAATTGCAACTCACCTTCCAGGAAGAACAGACAATGAAATAAAGAATTTCTGGAACACTCATTTAAAGAAGAGGCTAATTCAAATGGGTTTTGATCCAATGACCCATCAGCCAAGAACTGATCTTTTTTCAACCTTGCCATATCTACTAGCTTTGGCCAACAACATCACTGATTTCATGGATCATCATCAATCATTTGATGAACATTCTCTAACGCTCCAATTAGAAGCACTTCAATTAGCAAAATTTCAACAACTTAATTACTTACTTCAATCCACCACCCCCACCACTACTACTACTAATAGTTCCTTAAGCAACATTATTAGTACCAACAACTCCTATGACCAAAATAATAATGCCATCATCACAAATATGGAAGCTTTCAATTTGTTAAATTCAATCACTAATAATAATAATGACAAAGAAAATAATAACCTAGTTAATAATAATCTTCCCCCAGAATTGGATAATACCACATTATTATTTGATTCTTCTTCTTCCCAACCACTGCACCAATCAAGCAACATGCTATTACCTCATTTACTAGACCCATCACAGCCACAAGTCTCTTTGACAAGTTCCCAATCATGTTTGAATAATGATAATTTGTTGGAAGTTATGGGTGAAGGGGATGATCACATTATTTCTCCATGGAACATCATAAAGTCGTTATTGTCATTGTCTTCTTCGTCATCTCCCGGTTCTTCTTCAAATGTTCCACCACAAAATGCAAGCAGCAGCACTACTCCTAGCTATGCTGGAAGTGGAACCTCCTCTTACTGGCCTGAACTCTTTTTCGAAGATCCCATTATGCATGACGAGTTATAA 1098 0.377 MGRSPCCDENGLKKGPWTPEEDQKLVNHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKRLIQMGFDPMTHQPRTDLFSTLPYLLALANNITDFMDHHQSFDEHSLTLQLEALQLAKFQQLNYLLQSTTPTTTTTNSSLSNIISTNNSYDQNNNAIITNMEAFNLLNSITNNNNDKENNNLVNNNLPPELDNTTLLFDSSSSQPLHQSSNMLLPHLLDPSQPQVSLTSSQSCLNNDNLLEVMGEGDDHIISPWNIIKSLLSLSSSSSPGSSSNVPPQNASSSTTPSYAGSGTSSYWPELFFEDPIMHDEL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211603g00006 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Stsc211603g00006 365 CDD SANT 69 112 IPR001005 -
Stsc211603g00006 365 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc211603g00006 365 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc211603g00006 365 MobiDBLite consensus disorder prediction 321 346 - -
Stsc211603g00006 365 CDD SANT 16 61 IPR001005 -
Stsc211603g00006 365 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc211603g00006 365 FunFam Transcription factor MYB39 69 130 - -
Stsc211603g00006 365 FunFam MYB-related transcription factor 13 66 - -
Stsc211603g00006 365 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc211603g00006 365 Gene3D - 69 116 - -
Stsc211603g00006 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc211603g00006 365 SMART sant 13 63 IPR001005 -
Stsc211603g00006 365 SMART sant 66 114 IPR001005 -
Stsc211603g00006 365 Gene3D - 11 67 - -
Stsc211603g00006 365 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc211603g00006 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211603g00006 Stsc-Chr211603 48290 50396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211603g00006 1 361 MYB Transcription Factor Family AT1G34670 51.571 3.91e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211603g00006 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211603g00006 K09422 - gmx:100782792 419.853