Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211603g00004 ATGGATGATTCACATTCACTATCAGTTCATGTTGATTCTCCTGCTAAGTTTGAGTTGTCACATGAACAACAACAAAGACAAATCAAGCTTATGATGGGCCAAACAACAACAACCTTTGAGCCTCAACCCTCTCCTTCTATCATCCAAAAGGGTATTGCTGAAATTGCTGGTACATACATACTTATATTTTGTGGGTGTGGAGCTGCACTTGTGAAGGAGAAATTGCAGCTTACAATTATAGGGATAGCAGTTGTTTCAGGTCTAGCTTTGACGGTGGCTATTTATTCAGTTGGCCATGTCTCTGGTGGTCATTTTAACCCTGCCGTTACAATTGCTCTAGCCCTCGTCAGAAAATTTCAATTCAAACTAGCGCCTATGTATGTGATGTGCCAGTTGGTGGGATCAACGTTGGCCACAATGAGCCTCAAAGTGTTGTATCATGGCAAAGTTGATTTTGGAGTGACACTCACCAAATACACTTCTCCAACTTCTGATCTTAATGCTTTGCTATGGGAAATTATAATCACTTCCATACTCATGTTCACCATTTGTGGTGTTGCCACTGATCATAGAGGGAGCAAAGACCTTGCTGGAGTTGCTATAGGCATTGCAGTTCTTATAAACATCGTAATTGCAGGACCTACTACTGGGGCTTCCATGAATCCTGCAAGGAGTTTAGGCCCTGCCATAGTCTTAGGTGTTTACAAAAGTATTTGGGTTTACATCATTGGTCCTACACTTGGAGCAATCTTAGCAAGTATGGTATACATGTTCTTAAGGGTCCCCCAACAAACAAAACCTTAA 804 0.4154 MDDSHSLSVHVDSPAKFELSHEQQQRQIKLMMGQTTTTFEPQPSPSIIQKGIAEIAGTYILIFCGCGAALVKEKLQLTIIGIAVVSGLALTVAIYSVGHVSGGHFNPAVTIALALVRKFQFKLAPMYVMCQLVGSTLATMSLKVLYHGKVDFGVTLTKYTSPTSDLNALLWEIIITSILMFTICGVATDHRGSKDLAGVAIGIAVLINIVIAGPTTGASMNPARSLGPAIVLGVYKSIWVYIIGPTLGAILASMVYMFLRVPQQTKP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211603g00004 267 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 PRINTS Major intrinsic protein family signature 49 68 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Stsc211603g00004 267 CDD MIP 49 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 Gene3D Glycerol uptake facilitator protein. 9 266 IPR023271 -
Stsc211603g00004 267 Pfam Major intrinsic protein 45 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211603g00004 267 PANTHER AQUAPORIN NIP2-1 27 263 IPR034294 -
Stsc211603g00004 267 SUPERFAMILY Aquaporin-like 44 263 IPR023271 -
Stsc211603g00004 267 NCBIfam MIP family channel protein 53 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211603g00004 Stsc-Chr211603 26215 30728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211603g00004 44 264 Major Intrinsic Protein MIP AT5G37820 49.123 1.39e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211603g00004 K09874 - gmx:100798380 350.517