Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211602g00015 ATGGATGGTACAGCTGCAAGAAAGTCTCAAAAGGCTGACCGAGAAAAATTAAGAAGGGATCGGCTCAATGAACAATTTGTAGAACTGGGCAGCATTTTGGACCCTGATAGGCCTAAAAATGACAAAGCAACCATTCTTGGTGATACAATTCAATTGCTGAAGGATCTTACTTCTCAAGTTGGTAAACTCAAAGATGAATATGCTGCACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAACGATCTCAGGGAAGAGAAGGCTTCTCTTAAAACAGATATCGAAAACTTGAATAATCAGTATCAGCAGCGACTCAGGAATATGTTTCCTTGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATACCCAATGCCAATGGCAGTCCCTCCTGGTTCAATTCCCTTACAACCATACCCCTACTTTGCTAATCAAAATCCCTCCGTCATCCCTAACCCGTGTTCAACATTTGTTCCTTATTTAGCACCAAATACCCTTGTTGAACAACAATCTGCCCAGTATGTTTCCCCACCGCCTCATCCAGTTACTCGGTCCCATTTGTCGAGTAAACATGACTCCAGAAACAAATCACCCAGGGATAGAGAGAGCAAAGCAGAAAAATGTGAGGCTTCAAATGATGTCACCACAGACCTTGAGTTGAAGACTCCTGGTTCTTCTGCAGATCAGGATTTATCTTCTGGAAAAAGGAAATGCAGCAAATCGTTGAGGAAGGGAAGCAGTTGTACGGAAGGGAGTTCATTAGGTGGGTGTGCGTCGTCTCATAGTGTTCAAGACAGCTCATCAAGTAGTGTAGATGGTATCAGAAAGGATAACGAATGA 855 0.4281 MDGTAARKSQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILGDTIQLLKDLTSQVGKLKDEYAALNEESRELTQEKNDLREEKASLKTDIENLNNQYQQRLRNMFPWTAMDHSVMMAPPSYPYPMPMAVPPGSIPLQPYPYFANQNPSVIPNPCSTFVPYLAPNTLVEQQSAQYVSPPPHPVTRSHLSSKHDSRNKSPRDRESKAEKCEASNDVTTDLELKTPGSSADQDLSSGKRKCSKSLRKGSSCTEGSSLGGCASSHSVQDSSSSSVDGIRKDNE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211602g00015 284 Coils Coil 5 25 - -
Stsc211602g00015 284 Gene3D - 5 89 IPR036638 GO:0046983
Stsc211602g00015 284 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Stsc211602g00015 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Stsc211602g00015 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 76 IPR036638 GO:0046983
Stsc211602g00015 284 MobiDBLite consensus disorder prediction 190 219 - -
Stsc211602g00015 284 Coils Coil 53 108 - -
Stsc211602g00015 284 PANTHER TRANSCRIPTION FACTOR BHLH121 2 281 IPR044579 GO:0003700|GO:0006879
Stsc211602g00015 284 MobiDBLite consensus disorder prediction 175 284 - -
Stsc211602g00015 284 MobiDBLite consensus disorder prediction 249 276 - -
Stsc211602g00015 284 CDD bHLH_AtILR3_like 11 85 - -
Stsc211602g00015 284 SMART finulus 12 62 IPR011598 GO:0046983
Stsc211602g00015 284 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211602g00015 Stsc-Chr211602 76310 79299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211602g00015 4 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 65.145 1.72e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211602g00015 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211602g00015 - - adu:107477252 436.417