Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211602g00007 ATGGGTTTTTGTAGATTTGAAAGAGCAAAAACAAAGATTCACAGACACAAACAACAGTGTAAAGAGAATAAATTTATTTCGGATGATTTTGAATGGACCAGTGAAATTCCAGAATGTCCAGTGTATTATCCATCAAAGAAGGAATTCAAGAATCCTTTGATATATCTGCAGCAAATTGCTGCTGAGGCTTCTAAATTTGGAATATGCAAAATTGTTTCTCCTGTAATTGCATCTGTTCCTGCTGATGTTGTCTTAACGAAGGAGAAAAAAGACTTTAAATTCGAAACAAATGTGCAGCCTCTTCGGCTTTCTAAATGGAATGATAAAGATATAATGAACTTTTCAATGAGTGGAAGAAAATACACATATCACGAATTCGAGGTTCTAGCAAATCAAGCTTTTATCAGTTCAGGCTGTGTTTCCTCTTCTGATGTGGAAAAAAGATTCTGGCATGAGATGGTGAATGGAGAGAAGGCAACTGTTGAGTATGGAGTCAATATTGAGGGCAGTGCCTTTTCATGCCATCCTAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTTTCGAGACTGCCGCAATCTACACTGAGATTAGTTGGCAAAGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCATCACTTGTATAGCATAAATTATCACCATTCAGGTGCTAACAAAATCTGGTATGGAGTGCCTGCTTCTGCAGCCTCTCAGTTTGAAAATGTTGTATTGCATCATGTGTATAACCACAAAATCTTGTCGAAACATGGCGAAGACAGGGCTTTCCGGCTTCTTGCTCATAAAACTACAATGTTCCCTCCAAATATATTGCTGCAACATGGTGTGGCTGTTTACAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCTCCTTTCCTAGAGCATATCATGCCGGATTTAGTCTTGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGAGACTGGTTTCCGATGGGGGCTATAGCTAGCAGGCGCTACGCATATCTCAAAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAGAGAGGCAATGGAATTTTATAAGTCCTCAAAAGTAAGAGGTTCAATGAGCAAAAGTGATGATTTACAATCATATCTTGCTACTGTTCTGTCTTTTGTGCACCTTATGCAATTTTATGACAAGGCACTTTCGCGACTTAATGGTTCAAGAGAATGTTCGATTTCTTCAAATACCGTAGGTTCCTTGATTTGTCGCGACTGCCATAGAGATTGTTATGTAGCTTACTTGATGTGCAAGCACTGCAATTCTCTTCCCATTTGTCTTTACCATGACATTGCATTGCAGAGGTGTTCATGTGGGAGGAAATATACTGTTTATAAAAGGGATGATTTTCTGGAATTGAAGGATGCTGCCAAGAGTTTTGAACAAGAAGAAAGTATAAAGTTAAATCTTAAAGGGAAGGTGAATTTTGAAGTAGACATGTTATTCCCAAGAAATGATTGCATCCAAGATTCCCAGGTATGA 1566 0.3857 MGFCRFERAKTKIHRHKQQCKENKFISDDFEWTSEIPECPVYYPSKKEFKNPLIYLQQIAAEASKFGICKIVSPVIASVPADVVLTKEKKDFKFETNVQPLRLSKWNDKDIMNFSMSGRKYTYHEFEVLANQAFISSGCVSSSDVEKRFWHEMVNGEKATVEYGVNIEGSAFSCHPNDKLGRSKWNLKNFSRLPQSTLRLVGKEIPGITDPMLYIGMLFSMFAWHVEDHHLYSINYHHSGANKIWYGVPASAASQFENVVLHHVYNHKILSKHGEDRAFRLLAHKTTMFPPNILLQHGVAVYKAVQKPGEFVISFPRAYHAGFSLGFNCGEAVNFAIGDWFPMGAIASRRYAYLKMLPIIPFEELLCREAMEFYKSSKVRGSMSKSDDLQSYLATVLSFVHLMQFYDKALSRLNGSRECSISSNTVGSLICRDCHRDCYVAYLMCKHCNSLPICLYHDIALQRCSCGRKYTVYKRDDFLELKDAAKSFEQEESIKLNLKGKVNFEVDMLFPRNDCIQDSQV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211602g00007 521 ProSiteProfiles JmjN domain profile. 39 80 IPR003349 -
Stsc211602g00007 521 SMART cupin_9 182 352 IPR003347 -
Stsc211602g00007 521 Gene3D Cupin 39 398 - -
Stsc211602g00007 521 Pfam JmjC domain, hydroxylase 212 335 IPR003347 -
Stsc211602g00007 521 SUPERFAMILY Clavaminate synthase-like 180 377 - -
Stsc211602g00007 521 ProSiteProfiles JmjC domain profile. 182 352 IPR003347 -
Stsc211602g00007 521 PANTHER LYSINE-SPECIFIC DEMETHYLASE 31 490 - -
Stsc211602g00007 521 SMART JmjN_1 38 81 IPR003349 -
Stsc211602g00007 521 Pfam jmjN domain 40 72 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211602g00007 Stsc-Chr211602 15762 18012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211602g00007 35 491 JUMONJI Transcription Factor Family AT2G34880 32.342 1.50e-61 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc211602g00007 JmjC 2.5e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211602g00007 - - lang:109363426 720.309