Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211601g00009 ATGCAAATTCTCTACCTACTCTCTTTCTTCCTCTTCTTCCTCACATATGCAAAATCTCAGTCTGTGTATGAACAAGAACATGCAGTGTTGTTAAGGATAAAGCAATACTTTCAAAATCCACCATATCTCAGTGACTGGACCTCATCAAACACTTCTTCACACTGCAGTTGGCCAGAGATAACTTGCACCAATGGTTCTGTCACTTCACTGTCTATGAACAACTTCAACATAACTCAAACACTTCCACCTTTCTTGTGTTCACTAAAAAGCCTCAAACACATTGATTTTCAGTATAACTTCATCCCTGGTGAGTTCCCAAGATTCCTCTATGGATGCTCCAATCTTGAGTACCTTGATCTATCAGAGAACTACTTTGTTGGTGAGATTCCTCATGACATAGACAGGTTTGGAAGGTTGAAGTTTCTTAACCTTGGTTACAACAATTTCTCTGGTGATATTCCAAGTAGCATTGGAAATCTCAAAGAGCTGAGGAACCTTCAACTTCAGATGTGTCTCTTCAATGGTACTTTCCCTGATGAAATTGGCAACTTGTCAAACCTTGAGACCTTGGATATGTACACCAACCCCATGCTCCCTCAAAGAAAGTTGCCATCAAGCTTGACCAAGTTGAAGAATTTGAAGGTCTTTCGGATGTATGAGGCCAACTTGGTTGGTGAAATCCCTGAATCCATTGGAGAAATGGTGAATTTGGAGGAGTTGGATTTAGCACAAAATAATCTGACAGGACAAATTCCAATTGGTTTGTTCAAGCTGAAGAATCTGAGCCTGCTTTATCTTTTCAAAAACCAGCTTTCTGGAGTGATACCTGGAGTTGTTGAAGCATTCAACTTGACAATGTTGGACATTTCAGAGAACAATCTTTCGGGGACAATACCGAATGATTTCGGAAAGCTCAAAAGCTTGACTCAGTTGTGCTTGCAGATGAATCAACTATCTGGTGATGTACCAGAAAGCATTGGTACTTTGCCATATTTGACAGATTTCATCGTTTTCCAAAACAACTTATCAGGTAATCTTCCTAAAGACCTCGGCCGCTTCTCGAATCTCATAACTTTCCAGGTTTCATCTAATAGTTTTACTGGAAGACTTCCAGAGAATTTGTGCTATAATGGAATGTTACTTGGTTTAATTGCTTATGACAATAACCTGAATGGTGAGTTGCCAGAATCTCTAGGAAGTTGCAATACCTTGCTATATCTGAGAGTCGAAAATAACAAGCTTTCTGGAAACATTCCTAGTAGCTTGTGGACATCTAGGAACTTGTCGTGGTTTATGATAAGCGAGAACAAGTTCACTGGCCAGCTTCCTGAAGGTTTGCCTACAAATCTTTCAAAATTGTCCTTAAGTTATAATCAGTTTTTTGGTAGAATCCCAGATGGAGTGTCTTCCTTGAAGAATTTAGTGGTGTTCAATGCAAGTAACAACTTCTTCAATGGAAGTATTCCAAAGGGGCTAACAGAGCTTCGACAAATAACAACTATTTTGCTCGATCAGAACCGGATCACAGGGCCACTTCCATCAGATATAGTATCATGGAAGTACCTAGTAACTCTGAATTTGAGCCATAATCAAATCTCTGGAGAAATTCCAGATGCAATTGGCAAGTTACCTGCATTAAATGTATTGGACTTGTCAGAAAACAAGATCTCCGGGCAAATTCCACCACAAATAGCACTGATGAGGCCTACCAATCTCAATTTGTCCTCAAATCTTTTGACAGGAAGAGTTCCGACCTCCTTGCTGGCTTTCTTGTCAGCAGTCTTGTTGATTGTATTTTACAGAAAAAGGCAGCGAGAATTGCGCAAGTCATGGAAACTCACTTCCTTTCAGAGGCTGAGTTTCACCAAATCAAACATTGTGTCTTCGATGGCAGAAGAAAACATTGTCGGCCGGGGAGGATATGGTGCAGTATACCGTGTTGCCATTGAAGGTTTAGGCCATGTAGCTGTGAAAAAGATAAAGAATAACAGGAAGTTAGAGCCGAAACTCGAGAGTTCATTTCTTGCAGAGGTTGAAATACTGAGCAGCATTAGGCATACCAATATTGTCAAGTTGCTATGCTGCATCTCAAGTGAGGATTCTCTGCTCCTTGTCTATGAGTATCTTGAGAATCACAGCCTTGACAGATGGCTGCACCAGAAGAGTAAGTCATCAGGACATTATGATATCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCTCAAGGTTTGTGCTACATGCACCATGACTGCTTGCCACCGGTTGTTCATCGAGATGTCAAATCAAGTAACATTCTGTTGGATTCTGAATTCAATGCAAAAGTTGCAGATTTTGGTCTGGCAAAGATGTTGGTTGACCCGGAAGATGTTTCTACCATGTCCTCCGCCGTAGCCGGCACATTCGGCTACATTGCTCCAGAGTATGGTCAAACAACAAGAGTGAGTGAGAAGATAGATGTCTATAGTTTCGGAGTTATCCTTTTGGAACTAACAACCGGAAGAGAAGCAAATCAAGGAGAAGATGAGCACTTGTCTCTGGCCGGATGGGCGTCACAGCTTGTCGCCTTAGGAAGTAATATAGAAGATTTTCTAGATGAAGATGTTAAAGAACCAAGTAACTTGGAAGAAATGTGCAGCATCTTTGAACTTGGGGTCAAGTGCACTGCACCATTGCCAGCTAGTAGACCTTCCATGAAGGAGGTTCTAAAAACATTGCAAAGCTTCAGTAATCCATTTTCCAAAGTAGAGAAGAATGTTGGTTACTATGATGCTGCTCCCCTTCTTAAGAATAAAAATTGGGAAGAGCAGAGTTATTGA 2826 0.4098 MQILYLLSFFLFFLTYAKSQSVYEQEHAVLLRIKQYFQNPPYLSDWTSSNTSSHCSWPEITCTNGSVTSLSMNNFNITQTLPPFLCSLKSLKHIDFQYNFIPGEFPRFLYGCSNLEYLDLSENYFVGEIPHDIDRFGRLKFLNLGYNNFSGDIPSSIGNLKELRNLQLQMCLFNGTFPDEIGNLSNLETLDMYTNPMLPQRKLPSSLTKLKNLKVFRMYEANLVGEIPESIGEMVNLEELDLAQNNLTGQIPIGLFKLKNLSLLYLFKNQLSGVIPGVVEAFNLTMLDISENNLSGTIPNDFGKLKSLTQLCLQMNQLSGDVPESIGTLPYLTDFIVFQNNLSGNLPKDLGRFSNLITFQVSSNSFTGRLPENLCYNGMLLGLIAYDNNLNGELPESLGSCNTLLYLRVENNKLSGNIPSSLWTSRNLSWFMISENKFTGQLPEGLPTNLSKLSLSYNQFFGRIPDGVSSLKNLVVFNASNNFFNGSIPKGLTELRQITTILLDQNRITGPLPSDIVSWKYLVTLNLSHNQISGEIPDAIGKLPALNVLDLSENKISGQIPPQIALMRPTNLNLSSNLLTGRVPTSLLAFLSAVLLIVFYRKRQRELRKSWKLTSFQRLSFTKSNIVSSMAEENIVGRGGYGAVYRVAIEGLGHVAVKKIKNNRKLEPKLESSFLAEVEILSSIRHTNIVKLLCCISSEDSLLLVYEYLENHSLDRWLHQKSKSSGHYDILDWPKRLHIAIGAAQGLCYMHHDCLPPVVHRDVKSSNILLDSEFNAKVADFGLAKMLVDPEDVSTMSSAVAGTFGYIAPEYGQTTRVSEKIDVYSFGVILLELTTGREANQGEDEHLSLAGWASQLVALGSNIEDFLDEDVKEPSNLEEMCSIFELGVKCTAPLPASRPSMKEVLKTLQSFSNPFSKVEKNVGYYDAAPLLKNKNWEEQSY 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211601g00009 941 Gene3D Ribonuclease Inhibitor 201 331 IPR032675 -
Stsc211601g00009 941 Gene3D Ribonuclease Inhibitor 23 200 IPR032675 -
Stsc211601g00009 941 PRINTS Leucine-rich repeat signature 543 556 - -
Stsc211601g00009 941 PRINTS Leucine-rich repeat signature 284 297 - -
Stsc211601g00009 941 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515
Stsc211601g00009 941 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515
Stsc211601g00009 941 Gene3D Phosphorylase Kinase; domain 1 612 708 - -
Stsc211601g00009 941 SMART serkin_6 630 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211601g00009 941 SUPERFAMILY L domain-like 23 278 - -
Stsc211601g00009 941 Gene3D Transferase(Phosphotransferase) domain 1 709 925 - -
Stsc211601g00009 941 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 180 278 - -
Stsc211601g00009 941 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 377 596 - -
Stsc211601g00009 941 SUPERFAMILY L domain-like 279 621 - -
Stsc211601g00009 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 758 770 IPR008271 GO:0004672|GO:0006468
Stsc211601g00009 941 SMART LRR_typ_2 136 160 IPR003591 -
Stsc211601g00009 941 SMART LRR_typ_2 448 471 IPR003591 -
Stsc211601g00009 941 SMART LRR_typ_2 184 210 IPR003591 -
Stsc211601g00009 941 SMART LRR_typ_2 234 258 IPR003591 -
Stsc211601g00009 941 SMART LRR_typ_2 305 329 IPR003591 -
Stsc211601g00009 941 SMART LRR_typ_2 543 567 IPR003591 -
Stsc211601g00009 941 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 279 374 - -
Stsc211601g00009 941 FunFam Receptor-like protein kinase HSL1 610 708 - -
Stsc211601g00009 941 Pfam Protein kinase domain 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211601g00009 941 Gene3D Ribonuclease Inhibitor 332 594 IPR032675 -
Stsc211601g00009 941 ProSiteProfiles Protein kinase domain profile. 630 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211601g00009 941 FunFam Receptor-like protein kinase HSL1 isoform A 23 175 - -
Stsc211601g00009 941 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 709 924 - -
Stsc211601g00009 941 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Stsc211601g00009 941 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 280 903 - -
Stsc211601g00009 941 SUPERFAMILY Protein kinase-like (PK-like) 624 908 IPR011009 -
Stsc211601g00009 941 ProSitePatterns Protein kinases ATP-binding region signature. 636 659 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211601g00009 Stsc-Chr211601 53396 56465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211601g00009 21 931 Receptor kinase-like Gene Family AT5G25930 48.148 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc211601g00009 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211601g00009 - - gmx:100785907 1300.8