Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211601g00006 ATGACACCACCCCTCTCACGTGACTTTCCGTTACTCTTTTCCGTTATTCTCACCTTCTTCCTCATCTTCACCATCGCCAAATCCCAGCAACTTCACGATCAAGAACACCAACTCCTCCTGAGGATAAAACAGTACTTTCACAACCCACCCTCACTCTCTCACTGGACCCCTTCCTCCTCTCACTGTTCTTGGCCTGAACTCACCTGCAACCGCCACGGCTCCGTCACCGGAATAACTCTTTCCAACTTCAACCTCAGCCAAACGATACCTTCCTTTTTATGCGGCCTCAAGAACCTGACGCGTGCCGATTTCAGCCAGAACTTCATTCCCGGCGAGTTTCCGATAACTCTCTACAAATGCTCTCAACTTCAGTACCTTGATTTGTACATGAACAACTTCGAAGGTCAAATTCCCGATGACATTGACAGGCTGTCAAATTTGCAGTACCTGAATCTCGCGTCGACGAACTTCGCCGGCGACGTTCCGGCCGCGCTCGGAAATTTGAAGGAGCTCAGAGTTCTTCGCCTTCAGTACTGTCTTTTTAACGGAACTTTGCCTGATGAGATCGGAGATTTGTCCAATCTTGAATTCTTGGATTTGTCAACGAACACCATGCTTCCTCCTACAAGATTGCCATCGAGCTGGACCGGGTTGAAGAAACTCAAGACTTTTTATGCGTTTGCGTGTAACCTGGTTGGTGAAATTCCTGAAAGAATTGGAGAAATGGTGGCTTTGGAGAAGCTTGATTTGGCGCAGAACAAGTTAACAGGACAAATTCCAAGTGGTTTGTTCATGCTCAAGAATCTGAGCATTGTGTACCTTTGGCAAAACAAGCTCTCTGGAGTGATACCTGATTCGATTGAAGCATCAAACTTGACCGTCATTGATCTAACAAATAATAGCCTCACAGGGAAGATACCGGACGATTTCGGAAAGCTTGAAAACTTAAGTAATTTGAAATTGTCTATGAATAGCTTGTCAGGGGAGCTGCCTCAAAGCTTAGGCCGGCTTCGGTTGCTGATCGATTTTCGTGTCTTCAGCAACAAGTTATCAGGTACTCTTCCCCCTGACTTCGGCCGCTACTCGAAGCTTGAAATCTTCCATGTTGGAGACAATGATTTTACTGGAAAGCTTCCAGAAAACTTGTGTTATTATGGTGTGTTGCAAAATTTAACTGTCTATGAAAATAATCTGAATGGGGAGTTACCACAATCACTAGGAAATTGTAGAGCCCTGCAGGACCTGAAAATTCAGAAGAATGGATTTTCTGGTGTCATTCCTAGTGGCCTATGGACATCTTTCAATTTGTCAAATTTCATTGTAGCTAGTAATAAGTTTAGTGGTGAGCTTCCTGATAGATTGTCTGCGAATATTTCGCGATTTGATATCAGTGACAATCAGTTTTCTGGTAGAATTCCAGCTGCAGTGTCTTCCTGGACCAATGTGGAATACTTTGATGCCAGCAAGAACAACCTTACTGGAAGTATTCCACCTGGGATTACTGCTCTTCCCAAGCTACTATACCTCAATCTTCATCAGAACCAACTCAACGGGTCACTTCCATCAGATATATTTTCATGGAAGTCCCTACAAATTCTAGTTTTGAGCCGGAACAAACTCTCAGGACAAATTCCAGTTATGATTGGCCGGTTACCTGCTCTCAATGTTCTTGACCTCTCAGAAAATCAATTCTCTGGCCAAATTCCTTCTCTACCTTCAACACTAAGCAATTTCAATCTGTCCTCCAATCACTTGACAGGGAGGATTCCGAGTGATTTCGAAAATCCTGCATATGCTACCTGCTTTTTGGACAACCCTGGCCTCTGTGCTGCTACTCAAGTACTTAACCTTGCGCTGTGTAATTCTGGCTCTCAAAGGCCAACCAAAGGCTCATCTTGGTCTCTTGGTTTGATTATAGGCCTGGTGGTTATAGCTTTCTTGCTGGCTTCATTAGCTGCATTCTTGATTACCAGATTTTACAGCAAAAGGAACCGAGGACTGGACAACTCATGGAAGCTCATTTCCTTTCAAAGGCTAAGTTTCAGAGAATCAAGCATAGTATCATCATTGACAGAGAATAATATCATTGGCAGCGGCGGATACGGTACAGTTTACCGTGTGCCTGTTGATGGATTAGGCTATGTTGCAGTGAAGAAGATTTGGAACAACAGAAAGTTAAACCACAGGCTTGAGAGCTCGTTTCGCGCAGAGGTCAAGATATTGAGCAATATTCGTCATGGCAACATTGTGAAGTTGTTGTGCTGTATCTTCAATGAGGATTCCATGCTCCTTGTGTATGAGTATCTAGAGAATCATAGCCTAGATAAGTGGCTGCACAAGAGCAAGTTGTCATCCATGTCTGGTATAGTCAATCATTTTGTCCTTGATTGGCCAAAGAGATTGAAAATAGCCATTGGTGTTGCCCAGGGTCTAACATACATGCACCATGATTGCTCGCCGCCTGTGGTTCATAGAGATATGAAAACAAGCAACATACTTTTGGATTCTCAATTCAATGCAAAAGTTGCAGATTTTGGTCTTGCAAGGACGATGATCAAGCCTCATACCACCATGACAAGTGTTGTTGGCTCATTTGGATATATTGCTCCAGAGTATGTTCAAACGACAAAAGTGAGCGAAAAGGTTGATGTCTTCAGCTTTGGGGTTATACTATTGGAATTAACAACTGGAAAAGAAGCTAATTATGGAGATGAGCACTCATCTCTTGCAGAGTGGGCATGGCGCCATGTTCAGATAGGAACCGACATAGAAGAACTGCTGGACACTGATGTCATGGAGGCTAGTTACACTGATGAAATGTGCAGTGTTTTCAAACTTGGGGTCATGTGTACTTCCCCATTGCCTGCTGGTAGGCCTCAAATGAAGGAGGTTCAGCAACTGTTGCATCGATTCGGTGAAGGATTCGCATTTAGAGAGAGGAATATTGGGAAATATGAGATTATTCCCCTTCTTAAGAATTCAAAAATGGAAATGAGGCTGGATATTGACAATGATAGTGACTAA 3024 0.4352 MTPPLSRDFPLLFSVILTFFLIFTIAKSQQLHDQEHQLLLRIKQYFHNPPSLSHWTPSSSHCSWPELTCNRHGSVTGITLSNFNLSQTIPSFLCGLKNLTRADFSQNFIPGEFPITLYKCSQLQYLDLYMNNFEGQIPDDIDRLSNLQYLNLASTNFAGDVPAALGNLKELRVLRLQYCLFNGTLPDEIGDLSNLEFLDLSTNTMLPPTRLPSSWTGLKKLKTFYAFACNLVGEIPERIGEMVALEKLDLAQNKLTGQIPSGLFMLKNLSIVYLWQNKLSGVIPDSIEASNLTVIDLTNNSLTGKIPDDFGKLENLSNLKLSMNSLSGELPQSLGRLRLLIDFRVFSNKLSGTLPPDFGRYSKLEIFHVGDNDFTGKLPENLCYYGVLQNLTVYENNLNGELPQSLGNCRALQDLKIQKNGFSGVIPSGLWTSFNLSNFIVASNKFSGELPDRLSANISRFDISDNQFSGRIPAAVSSWTNVEYFDASKNNLTGSIPPGITALPKLLYLNLHQNQLNGSLPSDIFSWKSLQILVLSRNKLSGQIPVMIGRLPALNVLDLSENQFSGQIPSLPSTLSNFNLSSNHLTGRIPSDFENPAYATCFLDNPGLCAATQVLNLALCNSGSQRPTKGSSWSLGLIIGLVVIAFLLASLAAFLITRFYSKRNRGLDNSWKLISFQRLSFRESSIVSSLTENNIIGSGGYGTVYRVPVDGLGYVAVKKIWNNRKLNHRLESSFRAEVKILSNIRHGNIVKLLCCIFNEDSMLLVYEYLENHSLDKWLHKSKLSSMSGIVNHFVLDWPKRLKIAIGVAQGLTYMHHDCSPPVVHRDMKTSNILLDSQFNAKVADFGLARTMIKPHTTMTSVVGSFGYIAPEYVQTTKVSEKVDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHVQIGTDIEELLDTDVMEASYTDEMCSVFKLGVMCTSPLPAGRPQMKEVQQLLHRFGEGFAFRERNIGKYEIIPLLKNSKMEMRLDIDNDSD 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211601g00006 1007 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Stsc211601g00006 1007 Gene3D Ribonuclease Inhibitor 209 382 IPR032675 -
Stsc211601g00006 1007 Gene3D Ribonuclease Inhibitor 383 626 IPR032675 -
Stsc211601g00006 1007 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 239 969 - -
Stsc211601g00006 1007 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 188 288 - -
Stsc211601g00006 1007 SUPERFAMILY RNI-like 73 351 - -
Stsc211601g00006 1007 SMART serkin_6 690 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211601g00006 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Stsc211601g00006 1007 SUPERFAMILY Protein kinase-like (PK-like) 685 968 IPR011009 -
Stsc211601g00006 1007 SMART LRR_typ_2 551 578 IPR003591 -
Stsc211601g00006 1007 SMART LRR_typ_2 168 192 IPR003591 -
Stsc211601g00006 1007 SMART LRR_typ_2 242 266 IPR003591 -
Stsc211601g00006 1007 SMART LRR_typ_2 313 337 IPR003591 -
Stsc211601g00006 1007 SMART LRR_typ_2 503 527 IPR003591 -
Stsc211601g00006 1007 Pfam Leucine rich repeat 268 326 IPR001611 GO:0005515
Stsc211601g00006 1007 FunFam Receptor-like protein kinase HSL1 isoform A 32 183 - -
Stsc211601g00006 1007 Gene3D Ribonuclease Inhibitor 32 208 IPR032675 -
Stsc211601g00006 1007 Pfam Protein kinase domain 692 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211601g00006 1007 SUPERFAMILY RNI-like 290 595 - -
Stsc211601g00006 1007 Gene3D Transferase(Phosphotransferase) domain 1 769 980 - -
Stsc211601g00006 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 769 981 - -
Stsc211601g00006 1007 FunFam Receptor-like protein kinase HSL1 670 768 - -
Stsc211601g00006 1007 Gene3D Phosphorylase Kinase; domain 1 678 768 - -
Stsc211601g00006 1007 FunFam Leucine-rich repeat receptor-like protein kinase TDR 310 622 - -
Stsc211601g00006 1007 ProSiteProfiles Protein kinase domain profile. 690 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211601g00006 1007 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211601g00006 Stsc-Chr211601 34967 38547 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211601g00006 30 972 Receptor kinase-like Gene Family AT5G25930 50.522 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc211601g00006 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211601g00006 - - gmx:100798963 1346.26