Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211598g00005 ATGTTTGACCAAATGGAATATGCAACATATTCATCTGCAGAAGTTTGTGAAGGCTTTGAAACTCCACCAGCAGCAGCAGCATCAAATTCATCTTCATCAATTTCATCCATGATGATGATGAGGGGCAGCAACAGTAGTATGAGTAATAATAAGAAGAAGAACAGTAGTAGGAACAACAGCAATAACAACAACAACAATACAAGGAGGTTCAGTGATGAACAGATCAAGTCATTGGAATCAATATTTGAGACTGAATCAAGGCTTGAGCCAAGGAAGAAGCTTCAACTTGCAAGGGAGCTTGGTTTACAACCAAGGCAGGTTGCTATTTGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAGCTTGAGAGAGATTACAACATTCTCAGAAACAATTACAACAGTTTGGCTTCAAGGTTTGAGTCACTCAAGAAGGAGAAGCAAGCATTATTAATTCAGTTGCAGAAGCTGAATGACCTAATACAGAAGCCATCAATGGAGAAGAAAACTCATCAGAGTTGTAATAAAGAAGCTAAGAGCATGGACAGTGAATCAGAAAATGGTGACACAACAAAGAGTGGTGGTGAAGAAGCTGAGGCCAAACCAATAAGCCAATCATCAATGGCAGCAAGATCATCAGAACATGCAGTTCTTTGTGGTGGTGGTGGTGCTCTCTCAGATGATGACACAAGCATCAAAGTTGAGTACTTTGGAAACATGGAAGATGAGCTTGTGAATTTTGCTCATGATCATGGTGATGGTGGTTCTTTGACATCACCAGAAGATTGGGGTAATTTTGATTCTGATGATCTTTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 864 0.4062 MFDQMEYATYSSAEVCEGFETPPAAAASNSSSSISSMMMMRGSNSSMSNNKKKNSSRNNSNNNNNNTRRFSDEQIKSLESIFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYNILRNNYNSLASRFESLKKEKQALLIQLQKLNDLIQKPSMEKKTHQSCNKEAKSMDSESENGDTTKSGGEEAEAKPISQSSMAARSSEHAVLCGGGGALSDDDTSIKVEYFGNMEDELVNFAHDHGDGGSLTSPEDWGNFDSDDLLGQSTSDYQWWDFWS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211598g00005 287 Gene3D - 29 125 - -
Stsc211598g00005 287 MobiDBLite consensus disorder prediction 250 271 - -
Stsc211598g00005 287 SMART HOX_1 64 125 IPR001356 GO:0003677
Stsc211598g00005 287 SUPERFAMILY Homeodomain-like 63 133 IPR009057 -
Stsc211598g00005 287 CDD homeodomain 68 122 IPR001356 GO:0003677
Stsc211598g00005 287 MobiDBLite consensus disorder prediction 24 71 - -
Stsc211598g00005 287 Pfam Homeodomain 68 119 IPR001356 GO:0003677
Stsc211598g00005 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 231 IPR045224 GO:0003700
Stsc211598g00005 287 Pfam Homeobox associated leucine zipper 121 162 IPR003106 GO:0006355|GO:0043565
Stsc211598g00005 287 MobiDBLite consensus disorder prediction 165 213 - -
Stsc211598g00005 287 Coils Coil 113 161 - -
Stsc211598g00005 287 FunFam Homeobox-leucine zipper protein ATHB-7 35 121 - -
Stsc211598g00005 287 MobiDBLite consensus disorder prediction 22 72 - -
Stsc211598g00005 287 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Stsc211598g00005 287 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Stsc211598g00005 287 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Stsc211598g00005 287 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Stsc211598g00005 287 MobiDBLite consensus disorder prediction 165 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211598g00005 Stsc-Chr211598 82769 84645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211598g00005 60 287 Homeobox Transcription Factor Family AT2G46680 52.301 4.30e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211598g00005 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211598g00005 K09338 - gmx:100811208 286.574