Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211594g00017 ATGAGTTCCAAAACTACTACATTATACATTATTATGGGAAGCATGAGCATGAAGGTCCATCATTTAGCACGTGCACTGGAACCCTCCCTCTCCTTCAATGCCTGCACCAAGCGCTTTCGCCCTCTTGCCCCTAAGCTCGACACCACCACCCCTTCTTTTTCTACCACCTTTGACCTCAAGAGCTTCATAAGACCAGAGAGTAATAATGCCTCAAGAAAAGTCGTCTCCTCCGACGATAACATTAACAAAGACCCACCATCTTCCAATAATTCTTCTCCTGGCAGCCACCACCAGGCGTTGGTGGTGGAAACAACGCAAAATCCAGGAGGGACGCGGTGGAACCCGACGCAAGAACAGATAGGGATACTGGAGATGCTTTATAGAGGCGGGATGCGAACTCCTAACGCGAACCAGATTGAACAAATCACTGCACAACTTTCCAAGTACGGCAAGATCGAAGGCAAGAACGTCTTCTATTGGTTCCAAAACCACAAAGCACGGGAAAGGCAAAAGCTCAAGCGCACCAACAACGCTACCGATACTCCCACCTCCAAGAAGAAGTGTACCTCATGGAACTTTGATGATGATCATCACTGCTTCCAATTACAACGCACCCTCAACAACAACAACAATAAGTTTTCATTTTCATCATTGTCGTGTAAAGAGGACGAAAATAGAATAACTACCCTGGAGCTTTTTCCATTGCACCCCGAAGGAGGAATATGA 726 0.4656 MSSKTTTLYIIMGSMSMKVHHLARALEPSLSFNACTKRFRPLAPKLDTTTPSFSTTFDLKSFIRPESNNASRKVVSSDDNINKDPPSSNNSSPGSHHQALVVETTQNPGGTRWNPTQEQIGILEMLYRGGMRTPNANQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKLKRTNNATDTPTSKKKCTSWNFDDDHHCFQLQRTLNNNNNKFSFSSLSCKEDENRITTLELFPLHPEGGI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211594g00017 241 CDD homeodomain 111 171 IPR001356 GO:0003677
Stsc211594g00017 241 MobiDBLite consensus disorder prediction 68 97 - -
Stsc211594g00017 241 Pfam Homeodomain 111 170 IPR001356 GO:0003677
Stsc211594g00017 241 SUPERFAMILY Homeodomain-like 106 174 IPR009057 -
Stsc211594g00017 241 SMART HOX_1 108 175 IPR001356 GO:0003677
Stsc211594g00017 241 PANTHER WUSCHEL-RELATED HOMEOBOX 4 17 239 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Stsc211594g00017 241 Gene3D - 96 188 - -
Stsc211594g00017 241 ProSiteProfiles 'Homeobox' domain profile. 106 171 IPR001356 GO:0003677
Stsc211594g00017 241 FunFam WUSCHEL-related homeobox 4 110 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211594g00017 Stsc-Chr211594 81548 82837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211594g00017 17 176 Wox Gene Family AT1G46480 54.857 5.24e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc211594g00017 Homeodomain 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211594g00017 - - tcc:18591159 197.978