Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211594g00010 ATGGACAACACCATTGACCACTTGAAATCATCTTCCTCTTCGGAAGAGGATCAGATGGACTTCATGAACATCATGATGATGCAACTTCCTGATGAATTCTCTTCACCTAATAATACTTACTCTCATAATAACACCACCGTCCATGGATTCCACCCATCTAGCACTACTATGCAACTATCAGATTCAATTGATAATACTAGTAATTCTATCATGCCCTGGTCTTCGTCATTTGCACAATTTCCGTCCACCACAATCTCTTTCTCTAACAACAACCCTACCGCAATGCTTCATCATCAGCAACAGCAAGATCAAACAGAATTACCATCTCTGTTGGGAATTTCTTCAGGCAGTATGAGCGAGGGTGCAACAACGGAGGAGAAGCGGAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATAGCGGCCATGCAGCCAATACACATAGATCCTGAGTCAGTAAAGCCACCAAAGCGGAGGAACGTGAAGATCTCGAAGGATCCACAGAGCGTGGCGGCGCGTCACAGGAGAGAAAGGATAAGCGAGAGAATAAGGATTCTGCAGAGACTGGTCCCCGGAGGAACAAAGATGGACACTGCTTCAATGCTTGATGAGGCCATTCACTATGTCAAGTTTCTCAAGGCGCAGATTCATTCATTGGAACGAGCTTCTCCTTCTTCTGCACACAATAATAATAGTAATAATAATGCAACAGCAGCATCAATTTCTGCTGGTGCAGGTGCAGGGTTCCCAGTTGCAATGTATAGTAGGACAGCTACTGCCACTGCCACTGGCGCCCCTTATCTTTCTCTTCCTAAACCTTATTATCAAGGCCGAAATTGTCACCATTATAGAGATGCATGA 864 0.4502 MDNTIDHLKSSSSSEEDQMDFMNIMMMQLPDEFSSPNNTYSHNNTTVHGFHPSSTTMQLSDSIDNTSNSIMPWSSSFAQFPSTTISFSNNNPTAMLHHQQQQDQTELPSLLGISSGSMSEGATTEEKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKAQIHSLERASPSSAHNNNSNNNATAASISAGAGAGFPVAMYSRTATATATGAPYLSLPKPYYQGRNCHHYRDA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211594g00010 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Stsc211594g00010 287 FunFam BHLH transcription factor 167 231 - -
Stsc211594g00010 287 SMART finulus 170 219 IPR011598 GO:0046983
Stsc211594g00010 287 Gene3D - 163 237 IPR036638 GO:0046983
Stsc211594g00010 287 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 238 IPR045843 GO:0003700|GO:0006355
Stsc211594g00010 287 Pfam Helix-loop-helix DNA-binding domain 173 213 IPR011598 GO:0046983
Stsc211594g00010 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211594g00010 Stsc-Chr211594 40305 41168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211594g00010 131 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 93.407 3.10e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211594g00010 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211594g00010 - - gmx:100815041 243.817