Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211593g00014 ATGACACGTACCTTTAGATTCCTCACATCCACCGCCGACAACGCCACCGCCGTTGCCGCCGCTCCGCCTCCCGAGCCTGTGGAGCTCGAATCTGACTTTGTCGTCATCCTCGCAGCTCTCCTCTGCGCCCTCATATGCGTCGTCGGTCTCGTCGCCGTCGCCAGGTGCGCCTGGCTCCGCCGAGGCTCCGCCGCTGGAGCCTCGCCGCGCCAGTCCCTAGCCAACAAAGGATTGAAGAAGAAGGTTCTCCAGTCGCTACCGAAATTCGCGTACGTTGACGGAGGAAATCCTGAAGTCGGTGGCGCGGGGTGGATGGTGACGGCGGAGTGCGCGATCTGCCTTTCGGAGTTCGCCTCCGGCGACGAGATCCGCGTGTTGCCGCAGTGTGGACACGGATTCCACGTGGCGTGCATAGACACGTGGCTTGGATCACACTCGTCTTGCCCTTCGTGCCGACAGGTTTTGGCGGTGGCGAGGTGTCAGAAGTGCGGACGATTTCCGGCGAACGGAGCTGGCAGCACCTCCGCAAGAGCGGCGATTAATGAAACTGAGCTGAAGTCGAGAGAAGATGACAATGCCGTTTTTAGTAACAACAATAATAATAATAACAGTAACAGTAATAGTGGCGGTTTCAGTGGTAGCGGAAGCAGTAGCAACAGTAGTAATAGTAATACCAGCAACAATAATGATGGTTTCTTGCCTTGA 705 0.5688 MTRTFRFLTSTADNATAVAAAPPPEPVELESDFVVILAALLCALICVVGLVAVARCAWLRRGSAAGASPRQSLANKGLKKKVLQSLPKFAYVDGGNPEVGGAGWMVTAECAICLSEFASGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPANGAGSTSARAAINETELKSREDDNAVFSNNNNNNNSNSNSGGFSGSGSSSNSSNSNTSNNNDGFLP 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211593g00014 234 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Stsc211593g00014 234 FunFam E3 ubiquitin-protein ligase ATL6 67 158 - -
Stsc211593g00014 234 MobiDBLite consensus disorder prediction 192 234 - -
Stsc211593g00014 234 SMART ring_2 110 151 IPR001841 -
Stsc211593g00014 234 CDD RING-H2_EL5-like 109 152 - -
Stsc211593g00014 234 SMART FANCL_C_2 106 160 - -
Stsc211593g00014 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Stsc211593g00014 234 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 164 - -
Stsc211593g00014 234 Pfam Ring finger domain 109 152 IPR001841 -
Stsc211593g00014 234 SUPERFAMILY RING/U-box 109 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211593g00014 Stsc-Chr211593 70361 71578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211593g00014 5 190 C3H Transcription Factor Family AT1G76410 55.497 1.69e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211593g00014 - - adu:107487390 327.791