Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211593g00010 ATGCTTAAAGTTTGGTTCTTGGTGTTCATTGTTCTCTCCAATGGGTTCTCATCAACTGGGCAAGACATGCACAATTCCACAGTACCTGATGTTGTAAATATTGGGGCTCTCTTCAATTACAATGCCACTTTTGGTAGAACTGTAAAAATTGCCATAAAAGCTGCACTCAAAGACCTGAGTGCTAATCCATCTATTCTTGGTAAAACAAGGATGAATATCATCTTCCAAGAAGACTCTAAATACAGAGGTTTTCTGAGCATCTCTGAGGTTTTGCAGGTTGCAACGAAACATACTGTGGCTATAATTGGTCCCCAGTCTGCTGTGACAGCTCATGTCATATCTCATATTGCCAATGAGCTCCAAGTTCCTCTATTATCGTTTTCGGCTTTAGATCCCACCCTTTCTTCACTTCAGTTCCCATTTTTTATTAGAACTAGTCCTAGTGACCTTTATGTGATGAGTGCAATAGCAGACCTTGTTGACCACTATGGTTGGAAAGACGTTATTGCTTTCTACATCGATGACGACAGTGGGAGGAATGGCATTGAGGCTTTAGGTGATAAGCTTGCGGATAAACGTTGCAGGATCTCATACAAGGCACCTATGAGCCCTGAAGCAACCGAGGAAGAGATTACAAATGTGCTTGTTCAGGTGGCTTTGGCAGAATCCCGGGTTATAGTTGTTCACATCAACATTCTCTGGGGCCTCAAGGTTTTTGATATTGCAAAGAGACTTGGGATGATGGGAAGTGGGTATGTCTGGCTAGCCACTACTTTCCTTTCTGGTATACTTGAAATGAATACTCCCTTCCCTGCAGAATTCACTAATAATATTCAAGGTGTTATTACATTTCGCGTGTATACACCAGATTCTGAACTCAAAAGAAGGTTTGCTTCTAAATGGAAGAATTTGACTCAAGGGGAGACTGCTAATGGCCCCCTTGGATTAAGTGCTTTAGGTCTCTATGCATATGATACTGTTTTTGCACTTGCACATGCACTAGATGCATTTTTCAAGCAAGGGAACCGAATTAGTTTCTCAAGGGATCCAAAATTATCATTACCACAGGGAGACCACTTGCGCCTTGATACTTTGAACATCTTTAATGAAGGAAATTCTTTGCGGCAAAACATATATGAAGTTAACATGACTGGTGTGACAGGTACATTTAGGTATACACCTGACAGAGACCTTGTAAATCCTTCATATGAAATCATAAATGTGGTTGGATCAGGGTTTAGAAAGATTGGTTATTGGTCTAATTACTCTGGATTATCAGTTGATCCTCCAGAAGCTCTTTCTTCCAAACCAGTCAATAATTCCAGGGCAGGTAAAATTTTACTCCCTGTGATTTGGCCTGGAGATACTACCCAAAAGCCTCGCGGTTGGGTTTTTCCGAACAGTGGAAGGTTATTGAAAATTGGAGTTCCAATAAGTGTTAGTTACCATGAATTTGTCTCACAAGTACCAGGCACTGATACGTTTGAGGGATTCTGCATTGAGGTATTTCTTGCTGCTGTGAATTTGTTGCCTTATGCTGTCCCCTATAAGTTTATCCCGTTTGGCAATGATCACACCAACCCTAGCGCCACCGAGCTTGTTCGCCTGATCACAACGGGTGAATTTGATGGTGCTGTTGGTGATATTACAATTACTACAGAAAGAACAAAGATGGTAGATTTTACACAACCTTATATTGAGTCTGGTCTAGTGGTAGTAGCACCAGTTAAGAAGTCAGATTCTAGTGCGTGGGCGTTTTTGGCCCCATTTACGCCAATGATGTGGGCAGTCACAGCTATCTTTTTTCTACTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTTAATGATGAATTTAGGGGCCCTCCTAAACAACAAATAGTAACTACTTTATGGTTTAGTTTTTCAACCATGTTCTTTTCACACAGGGAAAATACAGTGAGCACTCTTGGCCGCTTTGTGCTGATTATATGGCTATTTGTAGTTCTTATAGTTAACTCGAGTTATACAGCGAGTCTGACCTCAATACTCACCGTGCAATCACTTTCTTCGCCCATAAAAGGAATCGAAAGTTTAGTGAATGGCAAGGATCCTATTGGCTACACAGAAGGTTCTTTTGCTAAAAATTATTTAATTCAGGAAATTGGCATTAACGAATCCAGGCTTGTTGCTCTGAACACGCCAGATGAAGCTGCGAATGCACTTAAAAAGGGTCCCCATAATGGCGGTGTCTGTGCATATATTGATGAGCGTGCCTATATGGAGCTCTTCCTTTCAAGCCGGTGTGATTTCACTGTTATAGGTCAAGAGTTCACCAGAGATGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCAATAGACCTGTCTACCACAATTCTTGAAATGGCAGAGAATGGAGACCTACAAAAGATCCACGACAAATGGCTTCTTCGCAGCGCTTGCTTATCACAAGGCACAAAGCTTGAAGTGGAAAGACTAAACCTCAAAAGCTTCTGGGGCCTCTATCTGATCTGTGGCTTTGCCTGCTTCCTTGCTCTCTTCATATATCTCATACAGATAGTTAGGCAGTACAGCAAGCACTCCTCACAGGAAATTCACCCTGCTGAACAGAGCTCATCATCAGGGTCTTCACGACTTCGGAGTTTCCTTTCATTTGTGGACGAAAAGGAAGAGACGGTTAAGCACCGGTCCAAGCGAAGGCAAACAGAGATGATCTCATGCCCAAGTGGTGTAGTTGGATCATCCATTGGCTTTAGTTCCAACAAAGACTATGCTCAGTCATCTCCATACAAAAGTGATGTTGGCAGTGAAGCCTGA 2826 0.4225 MLKVWFLVFIVLSNGFSSTGQDMHNSTVPDVVNIGALFNYNATFGRTVKIAIKAALKDLSANPSILGKTRMNIIFQEDSKYRGFLSISEVLQVATKHTVAIIGPQSAVTAHVISHIANELQVPLLSFSALDPTLSSLQFPFFIRTSPSDLYVMSAIADLVDHYGWKDVIAFYIDDDSGRNGIEALGDKLADKRCRISYKAPMSPEATEEEITNVLVQVALAESRVIVVHINILWGLKVFDIAKRLGMMGSGYVWLATTFLSGILEMNTPFPAEFTNNIQGVITFRVYTPDSELKRRFASKWKNLTQGETANGPLGLSALGLYAYDTVFALAHALDAFFKQGNRISFSRDPKLSLPQGDHLRLDTLNIFNEGNSLRQNIYEVNMTGVTGTFRYTPDRDLVNPSYEIINVVGSGFRKIGYWSNYSGLSVDPPEALSSKPVNNSRAGKILLPVIWPGDTTQKPRGWVFPNSGRLLKIGVPISVSYHEFVSQVPGTDTFEGFCIEVFLAAVNLLPYAVPYKFIPFGNDHTNPSATELVRLITTGEFDGAVGDITITTERTKMVDFTQPYIESGLVVVAPVKKSDSSAWAFLAPFTPMMWAVTAIFFLLVGAVVWILEHRVNDEFRGPPKQQIVTTLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIVNSSYTASLTSILTVQSLSSPIKGIESLVNGKDPIGYTEGSFAKNYLIQEIGINESRLVALNTPDEAANALKKGPHNGGVCAYIDERAYMELFLSSRCDFTVIGQEFTRDGWGFAFPRDSPLAIDLSTTILEMAENGDLQKIHDKWLLRSACLSQGTKLEVERLNLKSFWGLYLICGFACFLALFIYLIQIVRQYSKHSSQEIHPAEQSSSSGSSRLRSFLSFVDEKEETVKHRSKRRQTEMISCPSGVVGSSIGFSSNKDYAQSSPYKSDVGSEA 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211593g00010 941 Gene3D - 148 425 - -
Stsc211593g00010 941 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Stsc211593g00010 941 Pfam Bacterial extracellular solute-binding proteins, family 3 492 812 IPR001638 -
Stsc211593g00010 941 SUPERFAMILY Periplasmic binding protein-like II 446 814 - -
Stsc211593g00010 941 PIRSF IGluLR_plant 1 931 IPR017103 -
Stsc211593g00010 941 PRINTS Metabotropic glutamate GPCR signature 133 152 IPR000337 GO:0004930|GO:0007186|GO:0016020
Stsc211593g00010 941 PRINTS Metabotropic glutamate GPCR signature 168 185 IPR000337 GO:0004930|GO:0007186|GO:0016020
Stsc211593g00010 941 PRINTS Metabotropic glutamate GPCR signature 101 127 IPR000337 GO:0004930|GO:0007186|GO:0016020
Stsc211593g00010 941 PRINTS Metabotropic glutamate GPCR signature 152 168 IPR000337 GO:0004930|GO:0007186|GO:0016020
Stsc211593g00010 941 CDD GluR_Plant 472 812 - -
Stsc211593g00010 941 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Stsc211593g00010 941 FunFam Glutamate receptor 709 816 - -
Stsc211593g00010 941 MobiDBLite consensus disorder prediction 920 941 - -
Stsc211593g00010 941 Gene3D - 583 710 - -
Stsc211593g00010 941 Gene3D - 50 400 - -
Stsc211593g00010 941 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 874 IPR015683 -
Stsc211593g00010 941 FunFam Glutamate receptor 467 583 - -
Stsc211593g00010 941 Gene3D - 472 582 - -
Stsc211593g00010 941 FunFam Glutamate receptor 583 713 - -
Stsc211593g00010 941 MobiDBLite consensus disorder prediction 895 914 - -
Stsc211593g00010 941 FunFam Glutamate receptor 148 305 - -
Stsc211593g00010 941 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Stsc211593g00010 941 Gene3D - 759 819 - -
Stsc211593g00010 941 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Stsc211593g00010 941 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211593g00010 Stsc-Chr211593 40065 44683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211593g00010 5 910 Ion Channels AT3G51480 56.781 0.0 1094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211593g00010 K05387 - gmx:100785258 1384.78