Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211593g00009 ATGGTTAAAGTTTGGGTCTTGGTGTTGATTGTTCTCTCCAATGGATTCTATTCAAAAGGGGCAGACATGCAAAATTCCACAGTACCAAGGGTTGTAAATATTGGGGCTCTCTTCTCTTTCAGTACCCCTTTTGGTAGAAGTGTAAAATATGCTATAAAGGCTGCAGTAGATGATGTAAATTCTGATCCATCTATTCTTGGTAAAACAAAGCTGAATCTCATACTTCAAGAGGATTCTAAATACAAAGGCTTTCTTAGCATTTCTGAGGTTTTGCAGGTTGCAACAAAACATACTGTGGCTATAATTGGTCCCCAATCATCTGTAACTGCTCATGTCATAGCTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTATCGTTTTCGGCTTTAGACCCTACCCTTCTTTCACTTCAGTTCCCATTCTTTATTAGCACAGGTCACAGTGATCTTTATGTGATGACTGCAATAGCAGACTTTGTTGACCACTTTGGATGGAAAGATGTCATTGCTTTCTATGTGGATGATGATAATGGGAGGAATGGAATTGGAGCTCTAGCCGATAAGCTCGCCGAAAGGCGCTGCAGGATCTCGTTTAAGGCTGCTATGAGCCCTGATGCAACTAATGAGGAGATTACTAATGTGCTTGTTCAGGTGGCTTTGGCCGAATCTAGAGTTATAGTTCTTCACCTCAACACTGCTTGGCGCCTTAAGGTTTTCAGTCTTGCAAAGAATCTTGGGATGATGGAAAGTGGTTATGTCTGGATAGGTACTACTTTTCTTTCTGCTGTGCTTGATTTGGAAAGTCCCTTGCCTCCAGATGAAGTAGATGATATTCAGGGAGTTATTACTTTCCGTGTGTACACACCGGATTCTGGACTCAAAAGAAGGTTTGTTTCTGAGTGGAAGAATTTGACTCAAGCTGATAGTGCTAATAATGGCCCTCTTGGATTCACTCCTTTAATTCTATATGCATATGATACTGTTTATGCTCTTGCACATGCACTTGATTCATTTTTCAAACAAGGGAACAGAATTACTTTCTCTAATGATTCAAAGTTATCAGCATTAAGTGGTGACAACTTACATCTTGATGCTTTGAACATCTTCAATGAAGGACCTGCCTTGCGTAGCAGCATCTATGGAGTTAACATGACTGGTGTGACAGGTCCATTCAGGTATACATCTGATGAAAATCTTGCCAATCCTGCATATGAGATCATCAATGTGATTGGAACCGGGTCTAGGAAGATTGGTTATTGGTCTAACTACTCAGGATTATCAGTTGTTCCTCCAGATGCTCTTTATTCCAAGCCAGTTAATAATTCCAAGGCAAGTAAGACATTGCTTCCGGTGATTTGGCCTGGAGACACTGACCAAAAGCCTCGAGGTTGGGTTTTTCCCAACAGTGGAAAGCTATTAAAGATTGGAGTACCAATAAGGGTTAGTTACCTGGAATTTGTCTCTCCAGTAAAAGGCACTGATATGTTTCAGGGATTCTGCATTGATGTGTTTCTTGCTGCAGTGAATTTGTTGCCTTATGCTGTCCCCTATAAGTTTGTCCCCTATGGCGATGACCACATCAATCCTAGCGCCACTGACCTTGTTCGTCGGATCACAACGGGTGAATTTGATGGTGCTGTTGGTGACATTGCCATTACTACAGAAAGAACAAGGATGGTGGATTTTACACAGCCTTATATTGAGTCTGGTCTAGTTGTAGTAGCACCAGTTAAGAAGGCAGAATCCAATGCTTGGGCGTTTTTGTCCCCGTTTACGCCGATGATGTGGGCTGTCACAGCTATGTTTTTCTTATTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTTAATGATGACTTTAGGGGACCTCCCAAGAAACAAGTAGTTACTATCTTATGGTTCAGTTTTTCAACTATGTTCTTCTCACACAAGGAAAATACAGTGAGCACGCTCGGTCGCTTGGTGCTGATTATATGGTTATTTGTAGTTCTTATAGTTAACTCAAGTTACACAGCAAGTCTGACCTCAATCCTCACTGTGCAACAACTTTATTCACCCATCAAAGGCATTGAGAGTTTAGTAAATAGCAAGGATCCTATTGGTTACACGCAAGGTTCTTTCGCTAAAAATTATTTGATTCAGGAAATCGGCATTGCTGAATCGAGGCTTGTTCCTTTGAACACGCCGGAGGAAGCTGCGGATGCACTTAAAAAGGGTCCCCATGGTGGTGGTGTTTCTGCATACATTGATGAGCGTTCCTACATAGAACTCTTCCTTTCAAGCCGGTGTGATTTCACTGTTATTGGTCAAGAGTTCACTAGAGATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCATTAGCAATAGACCTGTCAACTGCCATTCTAGAAATGGCAGAGAATGGAGACCTACAAAGGATCCATGACAAATGGCTTCTGCGCAGCGCTTGCTTATCGCAAGGGACAAAGCTCGAAGTGGAAAGACTAAACCTTCAAAGCTTCTGGGGCCTCTATCTGCTTTGCGGCTTTGCTTGCTTCATTGCTCTCTTAATATATCTCATACAGGTCACTAGGCAGTACTTCAAGCATGGCACAGATGAACTTGATCCTTCTGACCAGAGCTCATCTTCAGGATCTGCGCGCCTTCGGAGTTTCCTTTCATTTGTAGATGAAAAGGAAGAGACAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAGGATCTCATACCGCAGCAGTATTGGATCATCCATTAGCTCAAACAAAGACTATGCTCAATCTTCTCCATACAAAAGTGATTGTGCTAATGATGCTCAATCTTCTCCATACAAAAGTGATGGTGCTAATGAAGCATGA 2859 0.4236 MVKVWVLVLIVLSNGFYSKGADMQNSTVPRVVNIGALFSFSTPFGRSVKYAIKAAVDDVNSDPSILGKTKLNLILQEDSKYKGFLSISEVLQVATKHTVAIIGPQSSVTAHVIAHIANELQVPLLSFSALDPTLLSLQFPFFISTGHSDLYVMTAIADFVDHFGWKDVIAFYVDDDNGRNGIGALADKLAERRCRISFKAAMSPDATNEEITNVLVQVALAESRVIVLHLNTAWRLKVFSLAKNLGMMESGYVWIGTTFLSAVLDLESPLPPDEVDDIQGVITFRVYTPDSGLKRRFVSEWKNLTQADSANNGPLGFTPLILYAYDTVYALAHALDSFFKQGNRITFSNDSKLSALSGDNLHLDALNIFNEGPALRSSIYGVNMTGVTGPFRYTSDENLANPAYEIINVIGTGSRKIGYWSNYSGLSVVPPDALYSKPVNNSKASKTLLPVIWPGDTDQKPRGWVFPNSGKLLKIGVPIRVSYLEFVSPVKGTDMFQGFCIDVFLAAVNLLPYAVPYKFVPYGDDHINPSATDLVRRITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVKKAESNAWAFLSPFTPMMWAVTAMFFLFVGAVVWILEHRVNDDFRGPPKKQVVTILWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPIKGIESLVNSKDPIGYTQGSFAKNYLIQEIGIAESRLVPLNTPEEAADALKKGPHGGGVSAYIDERSYIELFLSSRCDFTVIGQEFTRDGWGFAFPRDSPLAIDLSTAILEMAENGDLQRIHDKWLLRSACLSQGTKLEVERLNLQSFWGLYLLCGFACFIALLIYLIQVTRQYFKHGTDELDPSDQSSSSGSARLRSFLSFVDEKEETVKSRSKRRQMERISYRSSIGSSISSNKDYAQSSPYKSDCANDAQSSPYKSDGANEA 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211593g00009 952 PIRSF IGluLR_plant 1 949 IPR017103 -
Stsc211593g00009 952 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Stsc211593g00009 952 FunFam Glutamate receptor 468 584 - -
Stsc211593g00009 952 Pfam Receptor family ligand binding region 50 411 IPR001828 -
Stsc211593g00009 952 CDD GluR_Plant 471 813 - -
Stsc211593g00009 952 Gene3D - 470 583 - -
Stsc211593g00009 952 FunFam Glutamate receptor 710 817 - -
Stsc211593g00009 952 Gene3D - 756 820 - -
Stsc211593g00009 952 MobiDBLite consensus disorder prediction 910 952 - -
Stsc211593g00009 952 Gene3D - 148 426 - -
Stsc211593g00009 952 Gene3D - 51 401 - -
Stsc211593g00009 952 SUPERFAMILY Periplasmic binding protein-like II 447 815 - -
Stsc211593g00009 952 SUPERFAMILY Periplasmic binding protein-like I 28 465 IPR028082 -
Stsc211593g00009 952 CDD PBP1_GABAb_receptor_plant 33 430 IPR044440 -
Stsc211593g00009 952 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Stsc211593g00009 952 Pfam Bacterial extracellular solute-binding proteins, family 3 495 813 IPR001638 -
Stsc211593g00009 952 MobiDBLite consensus disorder prediction 896 952 - -
Stsc211593g00009 952 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 890 IPR015683 -
Stsc211593g00009 952 Gene3D - 584 712 - -
Stsc211593g00009 952 FunFam Glutamate receptor 584 714 - -
Stsc211593g00009 952 FunFam Glutamate receptor 148 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211593g00009 Stsc-Chr211593 35601 39218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211593g00009 5 914 Ion Channels AT3G51480 56.970 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211593g00009 K05387 - gmx:100793320 1410.59