Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211593g00005 ATGTCGTGCTCATCGTCGTCGGGGTCGGAGGAGGACGATGAGGGTTTCGATTCGTACCGGAAAGGAGGGTACCATGCCGTCAGAATCGGCGATCAGTTCGCCGGAGGAAGGTACATAGCTCAGAGGAAGCTCGGTTGGGGCCAATTCTCCACCGTCTGGCTTGCTTATGATACCACCAATTCCTCATATGTTGCTCTCAAGATCCAAAAAAGTGCAGCCCAGTTTGTTCAGGCAGCACTTCATGAGATTGATGTTCTTTCACACATTGCTAAGGGTGACCCTTCAAATTCGAAGTATGTTGTCCAATTAATTGACCACTTTAAACACGCTGGCCCGAATGGGCAGCATCTTTGCATGGTCCTCGAGTTTCTTGGTGATAGCTTGCTACGATTGATCAAATATAATCATTACAAATGCCTTCCATTGAATAAAGTTAGGGAAATGTGCAAATACATTTTGACTGGATTGGATTACTTGCACAGAGAACTTGGTATAATCCACACTGACCTCAAACCTGAAAACATTCTTTTAGTTTCAACCATTGATGCTGCCAAAGACCCTTTTAAATCTGGACAATCCCCAATTCTAGAGAGGCCCGAGGGAGGCATAAACGGTGGTGTCACAAGTCTTATTGAGAAAAGATTGAGAAGGAGAGCTAAGAGGGCTGTTGCTAAGATATCCGAGAAAAGATCCTCAATGGGTGTAGCTGGAGAAGAGCAAAAGTCTACTAGAAATATTGATGGGATTGATATGAGATGCAAGATCGTAGATTTCGGAAATGCATGTTGGGCTGATAAGCAGTTTGCTGAAGAAATACAGACAAGGCAATACAGAGCTCCTGAAGTTATACTGCAGTCTGGCTATTCCTTCTCTGTCGACATGTGGTCTTTCGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACGCCCAAGGGAGGTCAAGGTTTTAGTGAAGATGAGGATCATCTTGCCCTGATGATGGAGCTCCTCGGAAAGATGCCCCGGAAGGTAAGTACCCTCCCACTGCCTGACGTGTTTCTTGAATAG 1056 0.4527 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTNSSYVALKIQKSAAQFVQAALHEIDVLSHIAKGDPSNSKYVVQLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYNHYKCLPLNKVREMCKYILTGLDYLHRELGIIHTDLKPENILLVSTIDAAKDPFKSGQSPILERPEGGINGGVTSLIEKRLRRRAKRAVAKISEKRSSMGVAGEEQKSTRNIDGIDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKVSTLPLPDVFLE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211593g00005 351 Pfam Protein kinase domain 252 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211593g00005 351 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211593g00005 351 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Stsc211593g00005 351 Gene3D Transferase(Phosphotransferase) domain 1 92 340 - -
Stsc211593g00005 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Stsc211593g00005 351 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 221 - -
Stsc211593g00005 351 SUPERFAMILY Protein kinase-like (PK-like) 32 340 IPR011009 -
Stsc211593g00005 351 FunFam Protein kinase superfamily protein 24 123 - -
Stsc211593g00005 351 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Stsc211593g00005 351 SMART serkin_6 38 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211593g00005 351 ProSiteProfiles Protein kinase domain profile. 38 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211593g00005 Stsc-Chr211593 19532 23158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211593g00005 4 341 EF-hand Containing Proteins AT5G22840 50.895 2.98e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc211593g00005 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211593g00005 K08832 - gmx:100793851 574.318