Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211593g00004 ATGTCGTGCTCATCGTCGTCGGGGTCGGAGGAGGACGATGAGGGTTTCGATTCGTACCGGAAAGGAGGGTACCATGCCGTCAGAATCGGCGATCAGTTCGCCGGAGGAAGGTACATAGCTCAGAGGAAGCTCGGTTGGGGCCAATTCTCCACCGTCTGGCTTGCTTATGATACCACCAATTCCTCATATGTTGCTCTCAAGATCCAAAAAAGTGCAGCCCAGTTTGTTCAGGCAGCACTTCATGAGATTGATGTTCTTTCACACATTGCTAAGGGTGACCCTTCAAATTCGAAGTATGTTGTCCAATTAATTGACCACTTTAAACACGCTGGCCCGAATGGGCAGCATCTTTGCATGGTCCTCGAGTTTCTTGGTGATAGCTTGCTACGATTGATCAAATATAATCATTACAAATGCCTTCCATTGAATAAAGTTAGGGAAATGTGCAAATACATTTTGACTGGATTGGATTACTTGCACAGAGAACTTGGTATAATCCACACTGACCTCAAACCTGAAAACATTCTTTTAGTTTCAACCATTGATGCTGCCAAAGACCCTTTTAAATCTGGACAATCCCCAATTCTAGAGAGGCCCGAGGGAGGCATAAACGGTGGTGTCACAAGTCTTATTGAGAAAAGATTGAGAAGGAGAGCTAAGAGGGCTGTTGCTAAGATATCCGAGAAAAGATCCTCAATGGGTGTAGCTGGAGAAGAGCAAAAGTCTACTAGAAATATTGATGGGATTGATATGAGATGCAAGATCGTAGATTTCGGAAATGCATGTTGGGCTGATAAGCAGTTTGCTGAAGAAATACAGACAAGGCAATACAGAGCTCCTGAAGTTATACTGCAGTCTGGCTATTCCTTCTCTGTCGACATGTGGTCTTTCGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACGCCCAAGGGAGGTCAAGGTTTTAGTGAAGATGAGGATCATCTTGCCCTGATGATGGAGCTCCTCGGAAAGATGCCCCGGAAGATTGCGATTTCCGGAGCACAGTCCAAGGAATACTTCGACAGGCACGGTGATCTGAAAAGGATCCGGAGGCTAAAATTTTGGCCACTTGACAAATTGCTAATTGATAGATATAAGTTTCCAGAGACTGACGCACGTGAGTTTGCCGAATTTCTTACCCCTCTTTTTGATTTTGCGCCGGAGAAGCGACCAACTGCACAACAGTGCTTGCAACACCCTTGGATGAATCGCGATACATCTTCGAATGAGAATGAGAATGAATCTAGTGTGGAAACCGTGGAAGTTGGGATGAGCAACCTTAAACTCAAGGTGGGAAAGTGA 1335 0.4517 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTNSSYVALKIQKSAAQFVQAALHEIDVLSHIAKGDPSNSKYVVQLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYNHYKCLPLNKVREMCKYILTGLDYLHRELGIIHTDLKPENILLVSTIDAAKDPFKSGQSPILERPEGGINGGVTSLIEKRLRRRAKRAVAKISEKRSSMGVAGEEQKSTRNIDGIDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAISGAQSKEYFDRHGDLKRIRRLKFWPLDKLLIDRYKFPETDAREFAEFLTPLFDFAPEKRPTAQQCLQHPWMNRDTSSNENENESSVETVEVGMSNLKLKVGK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211593g00004 444 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 225 425 - -
Stsc211593g00004 444 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Stsc211593g00004 444 CDD STKc_SRPK 27 413 - -
Stsc211593g00004 444 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211593g00004 444 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211593g00004 444 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Stsc211593g00004 444 FunFam Protein kinase superfamily protein 24 123 - -
Stsc211593g00004 444 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Stsc211593g00004 444 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Stsc211593g00004 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Stsc211593g00004 444 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211593g00004 444 SUPERFAMILY Protein kinase-like (PK-like) 32 417 IPR011009 -
Stsc211593g00004 444 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211593g00004 Stsc-Chr211593 19482 23158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211593g00004 4 414 EF-hand Containing Proteins AT5G22840 51.940 4.20e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc211593g00004 Pkinase 3.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211593g00004 K08832 - qsa:O6P43_024963 721.85