Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211592g00009 ATGTGTTTTGGCCCACCAGAGAATCCTCATGTTGCTAATTATAAGATGGTTTTAGAAAGATTTCCACGTTCGTTGGATCGAAAAAAATGGTCAAATGAGGAAAAGGAAAATCTTATGAAGGGAATTAAGCAACAAATCCAAGAAGATATGCTTCGTGAAATTACGAGTTCTAAATTTTCACATGGAGATGGAAATTACATGGATAGCATAATGGAATCTATTAACCAATTTGATATTACACCCGAAATTATGAAAGAATATAAGGTTGATTGGGATAAGTTGGCTTCTACTCATGTTCCTGGCCGTACCGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCCTTGATCAACCATGGCCCATGGACTAGTGAAGAGGATAGGTTTCTTTTGCTCCTTATCCAACAAATGGGCATTAGGAACTGGTTCAATATTGCTGAATCATTGGGCACGAAAAGGACTCCATTTCAATGCTTGGCTCGATTTCAAAGGAGCTTAAATCCTTCAATGCTAAATAGAGAATGGACTAAAGAAGAAGATGCTCAACTCTGTTCTGCTGTAGCTATTTATGGAGAGAGCAATTGGCAAGCTGTGGCTTCTGTTTTAGAAAGGCGGACAGGAACCCAATGCTCAAATAGATGGAAGAAATCGCTTTTTCCTGAGAGAAAAGGGAGCTTTACTCAAGAAGAGGACAAGCGTTTGACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAGATTTGTTCCTGGTCGGACCCAATGTCAATGTAGGGACAGATACGTCAATAGTTTGGACCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAGATTGCAAGATGCAATTGCCAAGCACGGATTCTGCTGGTCTAAGGTTGCTGAAGACATGCCCCCTCGTACTGATTCTCAATGCAGGAAGAGATTTAAGGTGTTATTTCCTGATCAAGCTTATTTGCTTCAAGAAGCACGAAAGAAGCAAAAGTCTTTGGTTGCTGGTAACTTTGTTGATCGAGAATCTGAACGCCCAAACCTTACACTGAATGATTTCCTTCCTTTACCTACATTAGGCCCTCTTCCTTCTGGTGCTGCTGATGATGATGTTGATGAGAACCTCCCTAGGAAGCGGAAGAGGAAGTCAAGCAATGAAGCCAAGATTTCCAATGGAGATGTCAATATTCCCAAGAGGAGAAGGTCCCAAAAACATTCAAGAAATACTCCAGTTCATGCTAAGCAAGCTGAGGATACAGTACATGATGCTGAGGTCAAGGCGTGTAATGGGAAACTAAGTAGAAGTATGAAAGGTGCTGAAACATCAAAGAAGAAAAGAAAGAATAAAATGTTGAAACGTGAAAGCTTGTCTACTGGTGCTGAGTGTTCCGGAAGTGATGTTGAGGACGACATAACCCTTTCTTCCTTTGTACACAAGAAGTTAAATAAGAGAGGATTGAAGTGCAACAAAAATGATAGCCGTGCCTCTACATTTGCAACAGAAGTTGTGTCTAAGCAGGTCGATAATCAAAGCCCCTCTGCTGAGCAAGATGGTTCGTCTCAGTCATGTGGTGCTGTTGGAGTTGAACATTTGGTTACGGAGCAAAATGTCACCTCTGACAGGCTACTGACAAAACCAGAGAATGTAAATAGGTTGGCTGGTGATGACGACGACGACGACGACAAAATCACGCTTGCTTGCTTTATGGGAAACAAATCAAAAAAATGTAAAGTGACTAGAGGACCTAGTACTTTATCTTCTTCCAAATCAAAAGGTGCATCTGTTTCGGTTCCTGAAGTGGATTGCACAGAAAAGGCAACTGCAGAGGAAGAAGATGAAGTGCTTGCTACCTTCCTGCAGAATAAGTCTAAGGGAGTGCGAAGAAAGGTGAAACGTAAAGAAGGTAATTGCTAA 1929 0.4147 MCFGPPENPHVANYKMVLERFPRSLDRKKWSNEEKENLMKGIKQQIQEDMLREITSSKFSHGDGNYMDSIMESINQFDITPEIMKEYKVDWDKLASTHVPGRTGAECESRWLNCEDPLINHGPWTSEEDRFLLLLIQQMGIRNWFNIAESLGTKRTPFQCLARFQRSLNPSMLNREWTKEEDAQLCSAVAIYGESNWQAVASVLERRTGTQCSNRWKKSLFPERKGSFTQEEDKRLTVAVMLFGRKWNQIARFVPGRTQCQCRDRYVNSLDPSLKWGGWTEEEDSRLQDAIAKHGFCWSKVAEDMPPRTDSQCRKRFKVLFPDQAYLLQEARKKQKSLVAGNFVDRESERPNLTLNDFLPLPTLGPLPSGAADDDVDENLPRKRKRKSSNEAKISNGDVNIPKRRRSQKHSRNTPVHAKQAEDTVHDAEVKACNGKLSRSMKGAETSKKKRKNKMLKRESLSTGAECSGSDVEDDITLSSFVHKKLNKRGLKCNKNDSRASTFATEVVSKQVDNQSPSAEQDGSSQSCGAVGVEHLVTEQNVTSDRLLTKPENVNRLAGDDDDDDDKITLACFMGNKSKKCKVTRGPSTLSSSKSKGASVSVPEVDCTEKATAEEEDEVLATFLQNKSKGVRRKVKRKEGNC 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211592g00009 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 271 325 IPR017930 -
Stsc211592g00009 642 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Stsc211592g00009 642 Gene3D - 118 167 - -
Stsc211592g00009 642 Gene3D - 168 219 - -
Stsc211592g00009 642 MobiDBLite consensus disorder prediction 583 604 - -
Stsc211592g00009 642 CDD SANT 227 270 IPR001005 -
Stsc211592g00009 642 ProSiteProfiles Myb-like domain profile. 169 220 IPR001005 -
Stsc211592g00009 642 MobiDBLite consensus disorder prediction 583 599 - -
Stsc211592g00009 642 SUPERFAMILY Homeodomain-like 171 266 IPR009057 -
Stsc211592g00009 642 CDD SANT 176 220 IPR001005 -
Stsc211592g00009 642 Pfam Myb-like DNA-binding domain 124 185 - -
Stsc211592g00009 642 CDD SANT 123 168 IPR001005 -
Stsc211592g00009 642 CDD SANT 279 321 IPR001005 -
Stsc211592g00009 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 224 IPR017930 -
Stsc211592g00009 642 MobiDBLite consensus disorder prediction 354 469 - -
Stsc211592g00009 642 ProSiteProfiles Myb-like domain profile. 271 321 IPR001005 -
Stsc211592g00009 642 SMART sant 26 117 IPR001005 -
Stsc211592g00009 642 SMART sant 275 323 IPR001005 -
Stsc211592g00009 642 SMART sant 120 170 IPR001005 -
Stsc211592g00009 642 SMART sant 224 272 IPR001005 -
Stsc211592g00009 642 SMART sant 173 222 IPR001005 -
Stsc211592g00009 642 Pfam Myb-like DNA-binding domain 225 268 IPR001005 -
Stsc211592g00009 642 Pfam Myb-like DNA-binding domain 278 320 IPR001005 -
Stsc211592g00009 642 Pfam Myb-like DNA-binding domain 27 113 IPR001005 -
Stsc211592g00009 642 ProSiteProfiles Myb-like domain profile. 224 270 IPR001005 -
Stsc211592g00009 642 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 2 637 - -
Stsc211592g00009 642 MobiDBLite consensus disorder prediction 415 433 - -
Stsc211592g00009 642 SUPERFAMILY Homeodomain-like 250 323 IPR009057 -
Stsc211592g00009 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 265 IPR017930 -
Stsc211592g00009 642 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 168 IPR017930 -
Stsc211592g00009 642 ProSiteProfiles Myb-like domain profile. 22 113 IPR001005 -
Stsc211592g00009 642 Gene3D - 26 117 - -
Stsc211592g00009 642 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Stsc211592g00009 642 Gene3D - 277 320 - -
Stsc211592g00009 642 Gene3D - 222 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211592g00009 Stsc-Chr211592 55679 59700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211592g00009 1 372 MYB-Related Transcription Factor Family AT3G18100 55.820 4.17e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211592g00009 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211592g00009 K09422 - gmx:100818474 651.358