Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211590g00003 ATGAAGTTCATGAAAGGGATATGGAAATCAATGTTCCCGGGTTGTTACAAAGGAGAGTATCCATCAAGAAAGCCAAAGAGAGTGGTTTCGACGAAGCCGCCAATCTCATCACAGAGGGTCTCAGTGAGTGATTTGAGCTTCCCAAGCACAACATTCTCGGAAGATCTTTCGATATCGCTGGCCGGAACAAACCTGCACGTGTTCACGCTGGCTGAGCTGAAGGTGATCACGCAGCATTTCTCGTCGAGTAATTTCCTCGGCGAAGGCGGGTTCGGACCGGTTCACAAGGGGTTCATTGATGATAAGCTTAGACATGGACTTAAGGCTCAGCCTGTTGCTGTTAAGCTCTTGGACTTGGATGGCACCCAAGGCCATAAAGAGTGGTTGACTGAAGTGGTGTTCCTGGGTCAACTAAGGCATCCACACCTTGTGAAGCTGATTGGATATTGCTGTGAAGAAGATCATAGGCTTTTGGTATATGAATACTTACCCAGAGGCAGCTTAGAAAATCAATTATTTAGAAGATTCTCGGCATCATTGCCCTGGTCAACAAGAATGAAAATTGCAGTTGGAGCTGCAAAGGGTCTAGCCTTTCTCCATGAGGCAGAGAAGCAAGTCATCTATAGAGATTTCAAAGCTTCAAACATATTGTTAGACTCTGACTACAATGCAAAGCTATCTGATTTTGGATTAGCAAAGGATGGTCCTGAAGGAGATGACACCCACGTTTCAACTCGTGTTATGGGAACCCAAGGCTATGCTGCCCCGGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGACGTGTACAGCTTTGGAGTGGTATTGTTAGAGCTTCTAACAGGTAGAAGATCAGTGGACAAAAGTAAGGTACCAAGGGAACAAAACCTTGTGGAATGGGCAAGGCCAATGCTTAATGACCCAAGAAAACTTGGAAGGATAATGGACCCTAAACTTGAAGGGCAATACTCAGAGATGGGATCAAGAAAGGCTGCAGCTTTGGCCTACCAATGCCTAAGCCATAGGCCCAGGAACAGGCCCACTATGAGTGCTGTTGTTAGGGTTCTTGAGCCCCTTCAGGACTTTGATGATATTCCAATTATGCCCTTTGTGTATACCGTTCCTACTGAAAAGGAAAAGGAAACTCTTTCTCCTTCTCCTTCTCCAAATAATAATAAGGATAAGGAGAAGAGAAGAGTATTATTAGAAAGTGGGCATCCTCATAGGAATTATCATAGGCGTCCACATCCACTTGCTAAATATCCAAAGTCACCAAGGCCAAATTCAAATTCAGAGAATGAAAGACACCACCACCACAGAAATAGAAGATCATCGTCAAGTGAATCTGATTCTCCAACTCCACATAATTAA 1374 0.444 MKFMKGIWKSMFPGCYKGEYPSRKPKRVVSTKPPISSQRVSVSDLSFPSTTFSEDLSISLAGTNLHVFTLAELKVITQHFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEDHRLLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEKQVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKSKVPREQNLVEWARPMLNDPRKLGRIMDPKLEGQYSEMGSRKAAALAYQCLSHRPRNRPTMSAVVRVLEPLQDFDDIPIMPFVYTVPTEKEKETLSPSPSPNNNKDKEKRRVLLESGHPHRNYHRRPHPLAKYPKSPRPNSNSENERHHHHRNRRSSSSESDSPTPHN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211590g00003 457 SUPERFAMILY Protein kinase-like (PK-like) 65 383 IPR011009 -
Stsc211590g00003 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Stsc211590g00003 457 Gene3D Phosphorylase Kinase; domain 1 41 162 - -
Stsc211590g00003 457 FunFam Probable serine/threonine-protein kinase PBL8 163 373 - -
Stsc211590g00003 457 MobiDBLite consensus disorder prediction 404 457 - -
Stsc211590g00003 457 CDD STKc_IRAK 86 360 - -
Stsc211590g00003 457 FunFam Serine/threonine-protein kinase BIK1 48 162 - -
Stsc211590g00003 457 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Stsc211590g00003 457 PANTHER OS01G0588500 PROTEIN-RELATED 49 361 - -
Stsc211590g00003 457 ProSiteProfiles Protein kinase domain profile. 80 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211590g00003 457 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Stsc211590g00003 457 MobiDBLite consensus disorder prediction 378 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211590g00003 Stsc-Chr211590 39633 43494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211590g00003 66 357 Glycoside Hydrolase AT3G07070 53.220 6.26e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc211590g00003 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211590g00003 - - gmx:100797003 699.508