Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211588g00006 ATGGCTTCTAGTTGGGAGAGAAGAAGGGAGGCTCTTCAACAAAAGTTGAATCAACTCAGGGATGTTACAAATTCTAGTGCTGTGAATAAAGCTTCAATTATTGTGGATGCATCTAGATACATAGAGGAATTGAAGCAAAAAGTTGAAGGAATAAATTCAGAGCTTGTAATCCCAGAAAATTCTTCAACCTCTCAAATTGATGATGATGATGATGATGAACTACCTATGGTAACTGTGGGAACCCTAGAAAAGGGTTTTCACATTAATGTGTATTCAGAGAAGAATTGCCCTGGTATGTTGGTGTCAATACTAAAAGCATTTGAAGAACTTGGACTTGATGTTCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTTCAAGCAGTGGGTGGAGAAAGTCAAAAGAATAATGATACTATTGACGCTCAAGTGGTGAAGCAGGCAGTGTTGCAAGCAATCAAGAAAAATAATTACTAA 480 0.3771 MASSWERRREALQQKLNQLRDVTNSSAVNKASIIVDASRYIEELKQKVEGINSELVIPENSSTSQIDDDDDDELPMVTVGTLEKGFHINVYSEKNCPGMLVSILKAFEELGLDVLDARVSCEDTFQLQAVGGESQKNNDTIDAQVVKQAVLQAIKKNNY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211588g00006 159 CDD ACT_UUR-ACR-like 88 154 - -
Stsc211588g00006 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 53 IPR036638 GO:0046983
Stsc211588g00006 159 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 155 - -
Stsc211588g00006 159 Coils Coil 2 22 - -
Stsc211588g00006 159 Coils Coil 34 54 - -
Stsc211588g00006 159 Gene3D - 5 59 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211588g00006 Stsc-Chr211588 21861 24716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211588g00006 12 152 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.846 8.39e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211588g00006 - - gmx:100527466 212.616