Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211587g00011 ATGTCGAAAGATACATCAAGCTCCGATGACGATTCGGTTGTGTTCTTGGGCATTGTGACACCCCAAGATCGTGAACGTATGCGTCAAACTGAAAATAGTATAACTGGCAACACCAACGGTAATGTTGAAGGTCATGCTTCGGGTGCCATAAGGACCTTGAAGGGCAATAACAATAGCGATGGAAGCAACGAGGGCAAAGGAAAAGGTATCCCATCTGGATTCGAAGTATTCAACGGTTCTACTGCGGAGAGTACCACCACGGTGATGGAGAAAAAGAAAGAGAAAGAAGAAGAGAAAGAAAGAAAGAGGGCTAATAATAATAATGATGATAAGAACTTTCTTGTGGGTGAGTGCAGCAAAGCCCGAGAGAGGAAGCCCAGGGGGAGGCCCAGGAACAAGAAGAAGACGAACGAGCAAGTTTTGGATGAAATGATGAATCTGTTGCTACGCGCTGGATGGCAAATTGGTCCCAATTATGAAGAAAAAGAAGTAGTGTTCTATGATCTGAAACGAAAAGCTTATGATTCCATCTTTTCTGCGTACGACACTGTGAAAAAGAACTATGAGGGGGGCAAAGGGAAAGGCAGATTTTATTTGCAGGATTTCAAATTTGAGCCCTTGCTAGCTCGTGATATCAATAAGCTTCGTCTGTCATCATCATGGGAAGACTACACTAAGGATGATAAGGAGGAGAAGAAGAAGAAGAAAAGAAAATCTGATAATGACAATAACAAGAAGAAGAAGCAAGAGAGGAGTATGGAAACGGAGAGAGGAAAAGAAACAGTTGTTTATGATGATGATGATTCTGATTCTGATTCTGACGAGGATGATCCAAACGATGACACGTGTCTTTTGTGTGCAAATAAGCAAGAAGGCACGCTGATTTGTTGTGATAGCTGCCCTTCTTCTTTCCATCTAACTTGCTTGAAATTACTTGAGGTTCCAGCTGGTGACTGGTACTGCAGTTATTGCCGATGCAAATTTTGTGGGTTGATTAACACATCAACTTCAACTTGTGATAATTCTATGACACTCACATGTTGCTTTTGCGAGCATCATAGATACTGTTCGGAGAAGAATAATGGTGGTATCCGGATCAATCATTCAAATGATGCATTATCCTTTTGTGGTAACAGATGCCGAGAGTTGTTTGTGAGAGTTCAAAGGCTTCTTGGGGTCAAGCATGAAATTGGAGATGGATTTTCTTGCACCTTTATTTCTGGATCACTACGTGTTCCTCATACCCAAGTTGCAGAATTTAATGACAAACTGCTTAGGGCACTAGAAATAATGCACGATGGGTTCAAACCAGATTTTGATCCTAAAACTGGCATAAATTTCATACGCAATGTCATATATGGTTGTGGGGTTCATGAAAACAAAGTGGCAGAGATGCCACTTATTACAACCCATCGTATGTATAGGCAAAAAGGAATGTGTAGCCATTTTCTGAAAGCCATTGAATCTGTACTAAGCAGTTTACGTGTTGACTTATTGGTAATACCATCAGTGAAAGAACGGGAGAACACTTGGATTTCAGTGTTTGGGTTTGAGCCCTTTGATTGGGAAACGGAAATTAGAATAGAAAAAATGAAACTGTTACTTTGCCCTGACTCTGTTATGCTCAAGAAAAACATTGTCAGACAAGTTCCAAATAATAATTCAAGTGTGAAGCCTGTCCCAAATAATAGGGGTGATGGTAATGTTGTTTCAAGAAATAATAATGGTGAAGGTGAGGGTGCTGCTGAAGGAGACGATGGGAAGAAGAAGGAAAAAAGGGAGTCGAAGAAGGGGTCACCGTTGTATACTCTGGAAATGCTGATGAAGATTGGCAAAAACAAATCCACCAGAAGATGA 1857 0.4093 MSKDTSSSDDDSVVFLGIVTPQDRERMRQTENSITGNTNGNVEGHASGAIRTLKGNNNSDGSNEGKGKGIPSGFEVFNGSTAESTTTVMEKKKEKEEEKERKRANNNNDDKNFLVGECSKARERKPRGRPRNKKKTNEQVLDEMMNLLLRAGWQIGPNYEEKEVVFYDLKRKAYDSIFSAYDTVKKNYEGGKGKGRFYLQDFKFEPLLARDINKLRLSSSWEDYTKDDKEEKKKKKRKSDNDNNKKKKQERSMETERGKETVVYDDDDSDSDSDEDDPNDDTCLLCANKQEGTLICCDSCPSSFHLTCLKLLEVPAGDWYCSYCRCKFCGLINTSTSTCDNSMTLTCCFCEHHRYCSEKNNGGIRINHSNDALSFCGNRCRELFVRVQRLLGVKHEIGDGFSCTFISGSLRVPHTQVAEFNDKLLRALEIMHDGFKPDFDPKTGINFIRNVIYGCGVHENKVAEMPLITTHRMYRQKGMCSHFLKAIESVLSSLRVDLLVIPSVKERENTWISVFGFEPFDWETEIRIEKMKLLLCPDSVMLKKNIVRQVPNNNSSVKPVPNNRGDGNVVSRNNNGEGEGAAEGDDGKKKEKRESKKGSPLYTLEMLMKIGKNKSTRR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 1 138 - -
Stsc211587g00011 618 Pfam PHD-finger 283 327 IPR019787 -
Stsc211587g00011 618 ProSiteProfiles Zinc finger PHD-type profile. 280 327 IPR019787 -
Stsc211587g00011 618 SMART PHD_3 282 325 IPR001965 -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 31 65 - -
Stsc211587g00011 618 SUPERFAMILY FYVE/PHD zinc finger 269 327 IPR011011 -
Stsc211587g00011 618 PANTHER PHD FINGER PROTEIN 12 457 562 IPR042163 GO:0003714|GO:0045892
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 265 279 - -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 87 108 - -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 551 575 - -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 228 279 - -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 228 264 - -
Stsc211587g00011 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 382 IPR013083 -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 551 618 - -
Stsc211587g00011 618 Coils Coil 88 112 - -
Stsc211587g00011 618 Coils Coil 229 249 - -
Stsc211587g00011 618 MobiDBLite consensus disorder prediction 579 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211587g00011 Stsc-Chr211587 37305 40949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211587g00011 272 547 PHD Transcription Factor Family AT4G14920 35.032 6.23e-55 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211587g00011 PHD 6.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211587g00011 - - ahf:112696224 503.827