Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211586g00009 ATGGGTAGGGCAACAAAATGGTTTCGCGGGCTTTTCGGTCTCAGAAGGCATTCGGACTCTGCTGCACCACCACCCTCTACCACCACCGCTCCTAAACCACACAAAGACAAACGCCGTTGGAGTTTCGTTAACTCTTACAGAGAGAAGAACCTCCACCAACATCAACATCGCCATCAAGTACCACACGCTTCTTCTGCTCATCAAGACGATGATCCTCCCATCGAGGTGGCTGCTGTTGCCGCCGCTCATGCTCCAGCTGCCGCAGCTGGACTCAGAACCGCCGTGCCTTCTCGCAAAGAATGGGCAGCCGTGAAGATTCAGGCGGCGTTTCGAGGCTGTTTGGCAAGGAGAGCACTAAGGGCGTTAAAAGGATTGGTGAAACTGCAAGCATTGGTGAGAGGTCACATTGAGAGGAAGCGCACTGCACAGTGGCTGAAAAGAATGCAGACTCTCTTGCGAGCCCAGGCCCGTGCCCGTGCCACCCGGGCCCAATTTCAGCAGGCCTCTTATTTAGGCCCTATCTCCACTCCTCACTTCCATGTTCCAGCAACACCAGAGAAATTTGAAACCCCAATCCGATCTTCCAGCATGAAATATGATCACTCACCTTCAGTACTCAAGAGAAATGGTTCAAAGTCCCGTGGGGGCACTCCAGAAATATATGCAAAAGATGAACAATCGCGGACTCAACGAAGATCATGGACAAGGGCTTGTAGCATGGATGATGAAAGAAGCGGCAGGATTCTTGAAATTGACTCTGGAAAACCACACATGAATTCAAGACGCCGAAATCTCTTCGACTCTTCGAGTCAGCCATTGGTTTCAGATCATTACAGGCAGAGTTTCACCAGCACAAGGGACTCAACATCTCATCAATCAGCTCATAATCCATACTTGTGCGAGGCGGGTGAGGTTGAGGAGAGTTCTCTGTGTGGTGCTGCCAATAGTCCTTTTACTCCCACGAAGAGCGATGGCTCAAGAAGCTACCTAAGTAGTGGTGGTGGTTCTGAGTCCTATCCAAGTTACATGGCTTACACTGAATCTTCAAAAGCAAAGGTAAGGTCTTCGAGTGCACCGAGACAAAGACTCCAGTATGAGAGGTGTGGTTCATTCAATAATTCGAGATTGGCCTGGCAAACGCAAAGGGTATCATCCACAATGCGTGCAAGCTTCACTAGCAAAGCCTATCCAGGTTCTGGTCATTTGGACAACCTTGGTTATCCCCTTGGATATAGATACTGA 1242 0.4976 MGRATKWFRGLFGLRRHSDSAAPPPSTTTAPKPHKDKRRWSFVNSYREKNLHQHQHRHQVPHASSAHQDDDPPIEVAAVAAAHAPAAAAGLRTAVPSRKEWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQWLKRMQTLLRAQARARATRAQFQQASYLGPISTPHFHVPATPEKFETPIRSSSMKYDHSPSVLKRNGSKSRGGTPEIYAKDEQSRTQRRSWTRACSMDDERSGRILEIDSGKPHMNSRRRNLFDSSSQPLVSDHYRQSFTSTRDSTSHQSAHNPYLCEAGEVEESSLCGAANSPFTPTKSDGSRSYLSSGGGSESYPSYMAYTESSKAKVRSSSAPRQRLQYERCGSFNNSRLAWQTQRVSSTMRASFTSKAYPGSGHLDNLGYPLGYRY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211586g00009 413 PANTHER IQ-DOMAIN 5-RELATED 1 382 - -
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 193 211 - -
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 218 240 - -
Stsc211586g00009 413 Gene3D - 99 141 - -
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 31 45 - -
Stsc211586g00009 413 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Stsc211586g00009 413 Pfam IQ calmodulin-binding motif 126 140 IPR000048 GO:0005515
Stsc211586g00009 413 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Stsc211586g00009 413 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 316 336 - -
Stsc211586g00009 413 SMART iq_5 121 142 IPR000048 GO:0005515
Stsc211586g00009 413 SMART iq_5 98 120 IPR000048 GO:0005515
Stsc211586g00009 413 Pfam Protein of unknown function (DUF4005) 311 379 IPR025064 -
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 252 274 - -
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 15 70 - -
Stsc211586g00009 413 MobiDBLite consensus disorder prediction 193 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211586g00009 Stsc-Chr211586 81442 84314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211586g00009 1 73 IQD Protein Family AT4G23060 40.260 5.01e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211586g00009 - - gmx:100814244 325.479