Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211585g00007 ATGAGCCTTGTGGTGGAGCTCCCTGGTGGTGGATTGCGTGCTCACTGCAAAGGTGCTTCTGAGATCATTCTGGCCTCTTGTGACAAGGTGCTTAACTCGGCCGGCAAGGTTGTCCCGCTCGATGAAGAATCAAGTAACCATCTCAAGGCTACAATAGACCAGTTTGCTAATGAGGCACTCAGAACATTATGCCTTGCCTATATGGAATTAGATAATGGATTCTCTTCTGAGGATCCAATTCCTGATTCTGGCTATACTTGTATAGGAATTGTTGGTATCAAGGATCCGGTTCGCCCCGGCGTTAAGGAATCTGTAGCAGTATGCCGCTCTGCTGGGATCACAGTGAGGATGGTTACAGGAGATAATATCAATACTGCCAAGGCTATAGCCAGGGAATGTGGGATCTTGACTGATGATGGCATAGCCATTGAAGGTCCAGAGTTCAGAGAGAAGAGTGAGGAGGAATTGCTTAAACTCATTCCCAAAATTCAGGTTATGGCTCGATCTTCACCATTAGACAAACATACATTGGTGAAACACTTGCGCAACACGTTTGGGGAGGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCACTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTAGATGACAACTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCTGTTTACATAAATATTCAAAAATTCGTGCAGTTTCAGTTAACGGTTAATGTGGTTGCATTGATAGTGAACTTCACATCAGCATGTGTGACAGGAAGTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATCATGGATACACTGGGAGCACTAGCACTTGCAACTGAACCTCCCAATGATGATTTAATGAAGCGTTCGCCGGTTGGAAGGAAGGGCAATTTCATCAGCAATGTCATGTGGAGGAACATCTTGGGACAATCATTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGAGGAAAATCAATATTTTCTCTCGATGGCCCTGACTCGGATCTGGTCTTGAACACACTCATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCACGTGAAATGGAGGAAATAGATGTTTTCAAAGGCATATTGAATAATCATGTTTTCGTGGGTGTTCTCGCTGCTACTGTTCTGTTTCAAATCATAATAGTGGAGTACTTAGGAACCTTTGCAAACACGACACCTCTAACTCTGCTTCAATGGTTCTTTAGCTTGTTAGTTGGATTTTTAGGCATGCCAATTGCAGCTCGCTTGAAGAAAATCCGAGTTTGA 1362 0.4369 MSLVVELPGGGLRAHCKGASEIILASCDKVLNSAGKVVPLDEESSNHLKATIDQFANEALRTLCLAYMELDNGFSSEDPIPDSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSEEELLKLIPKIQVMARSSPLDKHTLVKHLRNTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACVTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFSLDGPDSDLVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGILNNHVFVGVLAATVLFQIIIVEYLGTFANTTPLTLLQWFFSLLVGFLGMPIAARLKKIRV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211585g00007 453 Pfam haloacid dehalogenase-like hydrolase 88 206 - -
Stsc211585g00007 453 Gene3D - 14 96 IPR023299 GO:0000166
Stsc211585g00007 453 PRINTS P-type cation-transporting ATPase superfamily signature 89 100 - -
Stsc211585g00007 453 PRINTS P-type cation-transporting ATPase superfamily signature 192 211 - -
Stsc211585g00007 453 PRINTS P-type cation-transporting ATPase superfamily signature 216 228 - -
Stsc211585g00007 453 PRINTS P-type cation-transporting ATPase superfamily signature 111 121 - -
Stsc211585g00007 453 NCBIfam HAD-IC family P-type ATPase 162 279 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211585g00007 453 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 451 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc211585g00007 453 Gene3D - 238 442 - -
Stsc211585g00007 453 Gene3D - 97 237 IPR023214 -
Stsc211585g00007 453 PRINTS H+-transporting ATPase (proton pump) signature 48 66 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211585g00007 453 PRINTS H+-transporting ATPase (proton pump) signature 192 208 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211585g00007 453 PRINTS H+-transporting ATPase (proton pump) signature 224 249 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211585g00007 453 PANTHER CATION TRANSPORTING ATPASE 1 452 - -
Stsc211585g00007 453 Pfam Cation transporting ATPase, C-terminus 277 450 IPR006068 -
Stsc211585g00007 453 FunFam Calcium-transporting ATPase 85 237 - -
Stsc211585g00007 453 SUPERFAMILY HAD-like 85 297 IPR036412 -
Stsc211585g00007 453 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 101 IPR023299 GO:0000166
Stsc211585g00007 453 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 451 IPR023298 -
Stsc211585g00007 453 FunFam Calcium-transporting ATPase 209 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211585g00007 Stsc-Chr211585 43536 45270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211585g00007 1 453 Primary Pumps ATPases AT4G37640 82.599 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211585g00007 K01537 - gmx:100792691 835.869