Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211585g00005 ATGGCTAACATGGACCAAAATTGTTGTGAATCTCTCAAAGATGGCAACAAATTCGGTCCGGCATTGCCACCGCCACCGCCACCTCCTCTGCCCCGTCCGGCAGCAACCAGGACCGGCTGTTGTCCTTGCAAGCGCCTTGTGGAGCAAAGCTATGTATCTCGGGCAGCAATAGAATTGTGGGATCGTCTTTTTGATACAGGGTATAAAGCAGATGTTAGGATTAACACTGGTAACGGTGGCATTCTTTACGCTCATTATAACATTATTGCAGTAGCATCCCCTGTATTAAGAGGCTTGCTGAAGCAAGGAAATGTTCGTCGGAGGTGGCGAACAATCACAATCTCAGGGGTCCCGCATGATGCTGTTCGGGTTTTCTTTCGATATTTGTACACTTCGTGTTATGAAAAGGAAGATATGGAGGAATTTGTACTACATTTGTTAGTGCTGTCACATGTATTCATGGTCCCTCAATTGAAGAGGGAATGTGAGCAGAAGCTAGAATCGAGTTCTCTAACGCTAGACAATGTAGTCGACGTATTTCAGATTTCGTTGCTTTGTGATGCTCCACGGCTTAGCCTCATCTGTCACCGCATGATACTTAGCAACTTCAAAGCAGTTTCAGAGTCTGAAGGATGGAAAGCGATGAAGGAGAGCCACCCAGCTTTAGAAAAGGAAGTTCTGGAGTCTATGATCGAAGAAGAAAATAATAAAAAAGAGAGGATCAGAAAGATCAATGAGAGGAAGATATACATGCAACTGTATGAAGCAATGGAAGCTCTTGTTCACATATGCAGAGATGGCTGCCGAACTATTGGCCCTTGTGACAAAGACTTCAAAGCGAATCAGCAGCCATGTAAATATTCCGCGTGTAAGGGACTAGAATTGCTTGTGCGACATTTTGCTGCATGCAAACTGAGAGTCCCTGGAGGTTGTTCTCATTGCAAGAGGATGTGGCAACTATTAGAGCTGCATTCTCGAATATGTTCTGATCCTGATGGTTGTAGAGTTCCTTTGTGCAGTAACTTTAAGCAGCGGATGTCAAAACAAAGCAAGAAAGAGGAAATCAGGTGGAAAATATTGGTTAAGAAGATCTTGAGAACAAGAGGCATTGGAATAGCACCATGCTTTCAGCAGCAATAA 1140 0.4412 MANMDQNCCESLKDGNKFGPALPPPPPPPLPRPAATRTGCCPCKRLVEQSYVSRAAIELWDRLFDTGYKADVRINTGNGGILYAHYNIIAVASPVLRGLLKQGNVRRRWRTITISGVPHDAVRVFFRYLYTSCYEKEDMEEFVLHLLVLSHVFMVPQLKRECEQKLESSSLTLDNVVDVFQISLLCDAPRLSLICHRMILSNFKAVSESEGWKAMKESHPALEKEVLESMIEEENNKKERIRKINERKIYMQLYEAMEALVHICRDGCRTIGPCDKDFKANQQPCKYSACKGLELLVRHFAACKLRVPGGCSHCKRMWQLLELHSRICSDPDGCRVPLCSNFKQRMSKQSKKEEIRWKILVKKILRTRGIGIAPCFQQQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211585g00005 379 Pfam BTB/POZ domain 63 169 IPR000210 GO:0005515
Stsc211585g00005 379 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 40 373 IPR044513 -
Stsc211585g00005 379 FunFam BTB/POZ and TAZ domain-containing protein 2 172 242 - -
Stsc211585g00005 379 FunFam BTB/POZ and TAZ domain-containing protein 2 244 369 - -
Stsc211585g00005 379 Gene3D TAZ domain 245 367 IPR035898 -
Stsc211585g00005 379 ProSiteProfiles BTB domain profile. 70 138 IPR000210 GO:0005515
Stsc211585g00005 379 SUPERFAMILY TAZ domain 247 348 IPR035898 -
Stsc211585g00005 379 Coils Coil 224 247 - -
Stsc211585g00005 379 SUPERFAMILY POZ domain 52 168 IPR011333 -
Stsc211585g00005 379 SMART TAZ_2 247 340 IPR000197 -
Stsc211585g00005 379 Pfam TAZ zinc finger 254 339 IPR000197 -
Stsc211585g00005 379 SMART BTB_4 70 170 IPR000210 GO:0005515
Stsc211585g00005 379 Gene3D - 171 244 - -
Stsc211585g00005 379 Gene3D Potassium Channel Kv1.1; Chain A 45 170 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211585g00005 Stsc-Chr211585 25086 27168 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Stsc211585g00005 BTB 1.7e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211585g00005 - - lja:Lj2g3v1968190.1 542.347