Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211584g00015 ATGTCTGCGAATTCCGAGAATATCGCGGTTTGTTCTCTTTGCCAGAAGGCATTATATCCTGATAATGAGATGACAAGTGATCCTGCAACAATTGGTGTATGTGGTGATTGTAAGTTTTTATTGCATGAAGACTATGGGAGTCATATGGATACCCCTCAGAGCTTGCAAAGAAGGGTTAGAGGCCGGTTCAGGCGCAACAGCTCTGAATCGGTTGACAATATGGTTAGTAATCTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAGCTGTGGAGGGGGATGCCGCCGCTTGGTCGGTGCAGTATCCTAGTACACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGTGATGGTTTCGATAATTGGAGCTCACTTTATGGTGAGAATGAATCAAATGAGAGCTTTAGACCGTATAGGTTTCCCCGTCTTGAGACTGATTCTGTCTCTTTCAGTGCTTATGGAGGTGACTCTGATGTCTCCGTGGATAGACGTAGTATTATACATAGAGGAAGGTTTGCTTTACTGGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCCAGGATCAGTCACTGGCACTCGGATGATATGGAAGATGACGAGGAAGAGGAGGAGGAGAATGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGATGTCGGACGGGAATGGGAAATAGCTGATGCTGTGGAAGCGGAAGCCACAGCTCGCCTTCAAATGTTTTTCACCTCAAATTCAAGTTCGAATAGGGGTAGCAATATTCGAGCACGAAGGTTTGATTCTGCTGAATCTGAGGTTGTCCAAATGGTCAGTAGCTGGGGAGCTGACTTGGAGGATACTGGTTTACCTCCCTATGATGCCAACTTTGGAGACTATCTTGATGCTAGACAATTTGAAGATTTTCTCGAGCATCTTGCCGAGAATGACAGTTCGAGACGAGGAGCACCTCCTGCATCTCTGTCATTTGTGAACAATCTGCCCCGTGTGGTCGTTGACAAGGACCACGAGAAGCATGGTGAACTAGTTTGTGCAATTTGCAAGGATGCGTTGGTACCTGGCATCGAAGCAAGTCAGCTTCCGTGCTCGCACCTATATCATGGAAGTTGCATTTTACCATGGTTGAGCACGCGGAATTCATGTCCTCTCTGTCGCTATGAGCTCCCAACTGATGACAGAGATTATGAAGAGGGAAAGCAGAACAGCGTTCTTCAGCCCGTGAACCATGACAGACAGCAACTAGATATGGTGGATGTGGATGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGCAGTAAACGAAGCAGATAGTACTAGTCCGCGTGTAATTCATCGTACAGAAGCTGTAAGTTCGAATTCTTCCACGAATTCTTCAGCAGCGGTAAGAGGTGGTAGAGGGAGATGGTTTTTTCTTGCCGCAGCTCCAATAGTTAGTTTAGTTGGCATTGCACTTGTCCTGTGGTTAGGTAACTCGCAGATTGAAGGGGATAGGCATCTCGGCCGGCGCAACATATCCGCCCAAAATCAGCATGCTGTTAATGTTGCCGCACCAGTCCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1677 0.4729 MSANSENIAVCSLCQKALYPDNEMTSDPATIGVCGDCKFLLHEDYGSHMDTPQSLQRRVRGRFRRNSSESVDNMVSNLRQSRSATASLEDVQQAVEGDAAAWSVQYPSTHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRPYRFPRLETDSVSFSAYGGDSDVSVDRRSIIHRGRFALLDVGDEFDSDTDIDPMHARISHWHSDDMEDDEEEEEENDDDDDDDEEEEEEEEEEEDVGREWEIADAVEAEATARLQMFFTSNSSSNRGSNIRARRFDSAESEVVQMVSSWGADLEDTGLPPYDANFGDYLDARQFEDFLEHLAENDSSRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVPGIEASQLPCSHLYHGSCILPWLSTRNSCPLCRYELPTDDRDYEEGKQNSVLQPVNHDRQQLDMVDVDVDVDDSSSDVSVLAAVNEADSTSPRVIHRTEAVSSNSSTNSSAAVRGGRGRWFFLAAAPIVSLVGIALVLWLGNSQIEGDRHLGRRNISAQNQHAVNVAAPVQRESRSRRWWCPF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211584g00015 558 ProSiteProfiles Zinc finger RING-type profile. 367 408 IPR001841 -
Stsc211584g00015 558 SMART ring_2 367 407 IPR001841 -
Stsc211584g00015 558 FunFam E3 ubiquitin-protein ligase RING1-like 328 414 - -
Stsc211584g00015 558 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 215 412 - -
Stsc211584g00015 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 414 IPR013083 -
Stsc211584g00015 558 SUPERFAMILY RING/U-box 349 415 - -
Stsc211584g00015 558 MobiDBLite consensus disorder prediction 208 248 - -
Stsc211584g00015 558 Pfam Ring finger domain 367 408 IPR001841 -
Stsc211584g00015 558 CDD RING-H2_PA-TM-RING 366 408 - -
Stsc211584g00015 558 MobiDBLite consensus disorder prediction 213 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211584g00015 Stsc-Chr211584 86741 89214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211584g00015 1 558 C3H Transcription Factor Family AT5G01980 38.291 8.42e-102 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211584g00015 - - pvu:PHAVU_008G078700g 627.861