Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211584g00006 ATGACAAATGTTGACAAGAGAGTATTTGGGCTCTACTTGTGCCGTGCTGACATCACTTCCTCACTTTGTGCTGAATGCATAGCAAACGCTACGAATCGAATAGCCTCGGAGTGTCCAATGTCCATAGATGCGGTGATCTGGTACAACCATTGCTTACTTCGCTATTCGAACTACTCTTTCTTCAGAACAATGACCACTGATCCAAGATTCGAGAGGGTGAATGTGACAAACTCTGAGGATTACAAAAGCTACTACAAGTACCAATTGTGGAGTGCATTGACAAAGGTGGCAGGGGATATATGGGACAGGAATGATAGATATTGTACGGAAACGTTTGTGTTGAACCATGTCCAAACGTTGTATGTGCAAGGGCAATGCACCAAAGATTTGTCTACCGGAGATTGTAATTACTGCATACACGATGTGATTGAAACGGCGATTCCGTGGTCCCGTTTGGGAAGCGTAGGTGGCAGAGTTTTGTATCCAAGCTGCACTTTGAGGTTTGAGTTGTTTCCTTTCTATCGGAATGGTACGCACGATCAGCCTCCGCCAACCAAAGAGAAAAATGGCAGATCACGAGCAATTATATTGATTGTTATCATCCCCATTGTTGCTTCGGTGTTACTCTTCTCTTTTTGTTGCTATTTGCTTAGGAAAAGAGCAAGAAAGAGTTACAATAAGACCATCCTCAAACAAAACTTTGGCCAAGAAAGTAACACTATAGGGGGCTTGCAATTCGAATTGTCTATAATTGAAGCTGCAACAAATAACTTTTCAGAAGAGAACAAGGTTGGCAAAGGTGGATTTGGACAAGTTTATAAGGGTGTTCTTCCTGATGGAAGACATATAGCTGTAAAGAGACTTTCAAAAAGTTCTACCCAAGGAGCAGCTGAATTCAAAAATGAGGTTTTATTAATAGCCAAACTTCAACATAAGAATCTAGTGGCATTTATAGGATTTTGTCTTCAAGAGGAAGAGAAGATACTTATCTATGAATATGTTCCAAATAAGAACTTGGACTACTTTTTGTTTGATCCTCATTCAGAGAAGTTATTAAGTTGGACTGAACGCTACAATATTATAGACGGAATTGCTCGAGGAATTCTTTATTTACATGAATATTCTCGTCTGAAAGTTATTCATCGTGATTTAAAACCTAGTAATATATTATTAGATGAAAATATGAATCCTAAAATTTCAGATTTTGGTCTTGCTCGAATTGTGAAACAACAACAAGAATCTACATCCAGAATAGTCGGAACGCTGGGTTATATGTCTCCGGAATATACAATGCAAGGAAAATTTTCAGAAAAATCAGATGTTTTCAGTTTTGGAGTCATGATACTCGAAATTATCATAGGAAAAAAGAATGTAGGTTCCAGTGAATCATATCTTAATGGAGAGGGTCTTCTAAGCTTAGTATGGAGACAATTTTGCAATGAAACACCATTAAGTGTATTGGACCCAAAAATGAAGGGAAATTGCTCTGAATTTGAAGTGATAAGGTGCATTCAGATTGGTTTATTGTGTGTTCAAGAAAATCCAGATGAAAGACCAACAATAGAGGCAATAGTGTCATATCTTAGTAATTTCTCAATTGAATTGCCTTCTCCACAACAACCAGCATTTTTCTTGCATTCTAAAATGGATCCAACAAAAACATTTGCTGGCGAGTCATCAAGTTCTATCTCTGTTAATGAGATATCTGAAAGTACTTTTCTTCCTAGATAG 1731 0.3778 MTNVDKRVFGLYLCRADITSSLCAECIANATNRIASECPMSIDAVIWYNHCLLRYSNYSFFRTMTTDPRFERVNVTNSEDYKSYYKYQLWSALTKVAGDIWDRNDRYCTETFVLNHVQTLYVQGQCTKDLSTGDCNYCIHDVIETAIPWSRLGSVGGRVLYPSCTLRFELFPFYRNGTHDQPPPTKEKNGRSRAIILIVIIPIVASVLLFSFCCYLLRKRARKSYNKTILKQNFGQESNTIGGLQFELSIIEAATNNFSEENKVGKGGFGQVYKGVLPDGRHIAVKRLSKSSTQGAAEFKNEVLLIAKLQHKNLVAFIGFCLQEEEKILIYEYVPNKNLDYFLFDPHSEKLLSWTERYNIIDGIARGILYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGLARIVKQQQESTSRIVGTLGYMSPEYTMQGKFSEKSDVFSFGVMILEIIIGKKNVGSSESYLNGEGLLSLVWRQFCNETPLSVLDPKMKGNCSEFEVIRCIQIGLLCVQENPDERPTIEAIVSYLSNFSIELPSPQQPAFFLHSKMDPTKTFAGESSSSISVNEISESTFLPR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211584g00006 576 ProSiteProfiles Protein kinase domain profile. 258 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211584g00006 576 Gene3D Transferase(Phosphotransferase) domain 1 334 538 - -
Stsc211584g00006 576 Gene3D - 2 60 IPR038408 -
Stsc211584g00006 576 Gene3D - 68 173 IPR038408 -
Stsc211584g00006 576 CDD STKc_IRAK 264 528 - -
Stsc211584g00006 576 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
Stsc211584g00006 576 ProSiteProfiles Gnk2-homologous domain profile. 1 60 IPR002902 -
Stsc211584g00006 576 SMART serkin_6 258 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211584g00006 576 FunFam cysteine-rich receptor-like protein kinase 10 334 535 - -
Stsc211584g00006 576 Pfam Domain of unknown function (DUF3403) 534 576 IPR021820 GO:0004674
Stsc211584g00006 576 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 218 333 - -
Stsc211584g00006 576 ProSiteProfiles Gnk2-homologous domain profile. 66 173 IPR002902 -
Stsc211584g00006 576 Gene3D Phosphorylase Kinase; domain 1 218 333 - -
Stsc211584g00006 576 Pfam Salt stress response/antifungal 5 58 IPR002902 -
Stsc211584g00006 576 Pfam Salt stress response/antifungal 83 169 IPR002902 -
Stsc211584g00006 576 SUPERFAMILY Protein kinase-like (PK-like) 243 554 IPR011009 -
Stsc211584g00006 576 Pfam Protein kinase domain 259 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211584g00006 576 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 571 - -
Stsc211584g00006 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211584g00006 Stsc-Chr211584 30393 34084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211584g00006 3 576 Receptor kinase-like Gene Family AT4G05200 45.620 1.90e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211584g00006 Pkinase 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211584g00006 - - ahf:112797275 801.586