Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211584g00004 ATGGGTTTGAGTTTGAATTCCCTCAAGCTTGTTCTTGTCTTCATCACCCTTTTCCCAATTACTAAAGCTAAGGAACTCGATTACCAAGGCCCAGTCTGTTCTGAAGATAGGACCACTTCTAACACCACCTACCAACTCAACCTCATCACACTTTTCTCTTCCTTGTCTTCCAAAGCCACCACCACCATATTTTACAAAGATTCTTCTAATGGAGTCTATGGACTATTCATGTGCAGGGGAGATGCACCCTTTGATGTTTGTGGAGACTGTGTTCAATCTGCAACACATGTTCTCTCTTCAGAGTGCACCTTATCCCTTTGGGGTATCATCTGGTACGAACAATGCATGGTTCGATATTCCAACACTTGTTTCTTCTCTGTTCCTTCAACACAGCCCTCCAATCTCATGTCCAACAACTTCAATGTTTCCACCAATCAAACAATGTTTGTTTCTTTGCTTGTCAATAGCATGAACAAAACCGCAGATGAAGCTGCCTTTTCTCTCAAGAAATATGCCACAAAGGAACAAAAGGTAACTCAAGTCCAAACTATCTTTAATCTCGCCCAGTGCACCCGAGATCTCGGGTTCCAAGCTTGTAGAACATGTCTTGGATTCGCCGTAGCGCAGATCCCAGTATGCTGTAAAGGAAGACGAGGAGGCAGAGTATTGCTCCCGAGTTGTAACATTAGGTTTGAATTATATCCTTTCTATAGCCACGTATCACGGGAACAAGTGCTTGTTCCGGCTACGAATTATCCAAATATTGACTCGAAATATTCCCAAGATCCCGGGTATTTATCTCACAATTGTTCAAGAACTAATTATCAAACAACAATTGACAAAAAAAGAATCACCACCATCCTCACTTACTTGTCTTCCAAGGCAAGAAACTCAAACAATAACAACGAGTTCCAAATGACAAATGTTGAAAACAGAATATTTGGGCTCTACTTGTGCCGTGCTGACATCCCTTCCTCACTTTGTGCTGAATGCATAGCGAACGCCACAAATCGAATAGCCTCGGAGTGTCCAATGTCCATAGATGCTGTAATCTGGTACAACCATTGCTTGCTTCGCTATGCAAACTACTCTTTCTTCAGAACAATGAGCACTAGTCCGAGATTCGAGTCGATGAACGTGACGAATTATGAGGATAACAGAAGCTACTACAAGTACCAATTGTGGAGTGCACTGACGAAGGTGGCAGGAGATATTTGGGACAGGAGTGATAGATATTGCAAAGAAACATTTGTGTTGAACGAGGTCCAGAGGCTTTATGTGCAGGGGCAATGCACCAAAGATTTGTCTACCGGAGATTGTAATTACTGCATACATGATGTGATTGAAACGGCGATTCCATGGTCTCGTTTGGGAAGCATTGGTGGAAGAGTTTTGTATCCAAGCTGCACTTTGAGGTTTGAGTTGTTTCCATTCTATTGGAATGGTACGGATGACCAACCTCCATCAACCAAAGAGAAAAATGGCAGATCAGGAGCAATTATCTTGATTGTTATCATCCCCATTGTTGCTTCGGTGTTACTCTTCTCTTTTTGTTGCTATTTGCTTAGGAAAAGAGCAAGAAAGTGTTATAATAAGACCATCCTCAAACAAAACTTTGGCCATGAAAGTAACACTATAGGGGGCTTGCAATTCGATTTGTCTATAATTGAAGCCGCAACAAATAACTTCTCAGAAGAGAACAAGATTGGCAAAGGTGGATTTGGACAAGTTTACAAGGGTGTTCTTTCTGATGGAAGACATATAGCTGTAAAGAGACTTTCAAAAAGTTCTAATCAAGGTGCTGCTGAATTCAAAAATGAGGTTTTATTAATAGCCAAACTTCAACATAAGAATCTAGTGGCATTTATAGGATTTTGTCTTCAAGAGGAAGAGAAGATACTTATCTACGAATATGTTCCAAATAAGAGCTTGGATTACTTGCTGTTCGATGGTCGATCAGAGAAGAGGTTAAGCTGGACTGAACGTTACAACATTATAGATGGAATTGCTCGTGGGATACTTTATTTACATGAATATTCTCGTCTCAAAATTATTCATCGTGATCTTAAACCTAGTAATATATTATTAGACGAAAACATGAATCCCAAAATTTCAGATTTTGGTCTTGCTCGAATCATAGATCAACAACAAGGATCTACAACTAGAGTTGTTGGAACATTGGGTTATCTCTCTCCTGAATATGCAATGCAAGGAATACTTTCTGAAAAATCAGATATTTTTAGCTTTGGAGTCATGATACTCGAAATTATTACTGGAAAAAAGAACGTAAGTTCCAACGAATTATACTGTAACGCAGAAGGTCTTCTAAGCTTGGTATGGAGACAATTTTGCAATCAAACATCATTAAGTGTATTGGACCCAAAAATGAAAGAAAATTGGTGTGATGAATTTGAAGTGATAAGGTGCATTCAGATTGGTTTGTTGTGTGTTCAAGAAAATCCAGATGATAGACCTACAATAGAAGCAATAGTGTCATATCTTAGCAATATCTCAATTGAATTGCCTTCTCCGCATGAACCAGCATTTTTCTTGCATGGTAAAATGGATCCAACAAAAATATATGCTGGCGAGTCATCAAGTTCTATCTCTGTTAATGGCATATCTAAAAGCATTTTTCTTCCCCGATAG 2649 0.3937 MGLSLNSLKLVLVFITLFPITKAKELDYQGPVCSEDRTTSNTTYQLNLITLFSSLSSKATTTIFYKDSSNGVYGLFMCRGDAPFDVCGDCVQSATHVLSSECTLSLWGIIWYEQCMVRYSNTCFFSVPSTQPSNLMSNNFNVSTNQTMFVSLLVNSMNKTADEAAFSLKKYATKEQKVTQVQTIFNLAQCTRDLGFQACRTCLGFAVAQIPVCCKGRRGGRVLLPSCNIRFELYPFYSHVSREQVLVPATNYPNIDSKYSQDPGYLSHNCSRTNYQTTIDKKRITTILTYLSSKARNSNNNNEFQMTNVENRIFGLYLCRADIPSSLCAECIANATNRIASECPMSIDAVIWYNHCLLRYANYSFFRTMSTSPRFESMNVTNYEDNRSYYKYQLWSALTKVAGDIWDRSDRYCKETFVLNEVQRLYVQGQCTKDLSTGDCNYCIHDVIETAIPWSRLGSIGGRVLYPSCTLRFELFPFYWNGTDDQPPSTKEKNGRSGAIILIVIIPIVASVLLFSFCCYLLRKRARKCYNKTILKQNFGHESNTIGGLQFDLSIIEAATNNFSEENKIGKGGFGQVYKGVLSDGRHIAVKRLSKSSNQGAAEFKNEVLLIAKLQHKNLVAFIGFCLQEEEKILIYEYVPNKSLDYLLFDGRSEKRLSWTERYNIIDGIARGILYLHEYSRLKIIHRDLKPSNILLDENMNPKISDFGLARIIDQQQGSTTRVVGTLGYLSPEYAMQGILSEKSDIFSFGVMILEIITGKKNVSSNELYCNAEGLLSLVWRQFCNQTSLSVLDPKMKENWCDEFEVIRCIQIGLLCVQENPDDRPTIEAIVSYLSNISIELPSPHEPAFFLHGKMDPTKIYAGESSSSISVNGISKSIFLPR 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211584g00004 882 Pfam Salt stress response/antifungal 281 363 IPR002902 -
Stsc211584g00004 882 Pfam Salt stress response/antifungal 33 121 IPR002902 -
Stsc211584g00004 882 Pfam Salt stress response/antifungal 381 474 IPR002902 -
Stsc211584g00004 882 Pfam Salt stress response/antifungal 146 234 IPR002902 -
Stsc211584g00004 882 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 870 - -
Stsc211584g00004 882 CDD STKc_IRAK 569 837 - -
Stsc211584g00004 882 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 523 638 - -
Stsc211584g00004 882 ProSiteProfiles Gnk2-homologous domain profile. 26 124 IPR002902 -
Stsc211584g00004 882 ProSiteProfiles Gnk2-homologous domain profile. 261 365 IPR002902 -
Stsc211584g00004 882 SMART serkin_6 563 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211584g00004 882 Pfam Protein kinase domain 564 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211584g00004 882 ProSiteProfiles Gnk2-homologous domain profile. 130 236 IPR002902 -
Stsc211584g00004 882 FunFam cysteine-rich receptor-like protein kinase 10 639 841 - -
Stsc211584g00004 882 SUPERFAMILY Protein kinase-like (PK-like) 548 858 IPR011009 -
Stsc211584g00004 882 ProSiteProfiles Protein kinase domain profile. 563 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211584g00004 882 Gene3D - 27 124 IPR038408 -
Stsc211584g00004 882 Gene3D - 263 365 IPR038408 -
Stsc211584g00004 882 Gene3D - 372 478 IPR038408 -
Stsc211584g00004 882 Gene3D - 132 236 IPR038408 -
Stsc211584g00004 882 ProSitePatterns Protein kinases ATP-binding region signature. 569 591 IPR017441 GO:0005524
Stsc211584g00004 882 Gene3D Phosphorylase Kinase; domain 1 524 638 - -
Stsc211584g00004 882 Gene3D Transferase(Phosphotransferase) domain 1 639 843 - -
Stsc211584g00004 882 FunFam Cysteine-rich receptor-like protein kinase 25 132 236 - -
Stsc211584g00004 882 ProSiteProfiles Gnk2-homologous domain profile. 371 478 IPR002902 -
Stsc211584g00004 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211584g00004 Stsc-Chr211584 23574 27250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211584g00004 260 882 Receptor kinase-like Gene Family AT4G05200 42.511 9.74e-163 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211584g00004 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211584g00004 - - ahf:112797275 1230.7