Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211583g00004 ATGGTGGTTATGATAATGGGTTCTTTAGGAGGAGAGAAAGGGTGGAAGAAAGGGCCATGGACTCATGAAGAAGACAAGTTACTCACTGAATATGTCACCTTGCATGGAGAAGGAAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGCAAAAGTTGCAGATTGAGATGGGTGAATTATTTGAGGCCAGGTCTCAAGAAGGGTCACTTAACACCAATGGAAGAAGGAATAATAATTGAATTGCATGCTATTTTGGGCAACAAGTGGTCTACAATAGCAAGGTATTTGCCCGGTAGAACTGATAATGAGATAAAAAACTATTGGAGAACCCACTTCAAAAAGAAAGACGATTCCAAGCACAAGAAGAAGCTAAAAAGGAGGAGAAGATCAAACGTGATGACAAAGGATCATCAGCAACAAGTCATAATGGAGGATACCAACAACAACAATAATAATAATAATAATAATAATGAAAATACCAAATCCTACTATGATGAAGAGACAAAAGAAAACTACTATGATAATAATAATATGGGGTTAATTTACCCTAATAATAATAACAAACCAACAATGTTATTAGAGCATCAACAAAGCTTCCCTTTGATGCATCAAGATTATTTCTCATCATCACCTTCATGGCCAGACACTACTACAACAGCAGCAGATTATTATGATGCCTTCTTGTTTAGTTTGTGGGATTTTGATGTACCTCAGGGCTTTGAAGAACATGTTAACCAGCTCACCAAATATGTGCTTCCAAACCAAGCTATATCTACCTTTGGTGATGGAGGGAACAACCCATGCAAAAATACTTATTAG 828 0.3744 MVVMIMGSLGGEKGWKKGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGHLTPMEEGIIIELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKDDSKHKKKLKRRRRSNVMTKDHQQQVIMEDTNNNNNNNNNNNENTKSYYDEETKENYYDNNNMGLIYPNNNNKPTMLLEHQQSFPLMHQDYFSSSPSWPDTTTTAADYYDAFLFSLWDFDVPQGFEEHVNQLTKYVLPNQAISTFGDGGNNPCKNTY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211583g00004 275 CDD SANT 74 115 IPR001005 -
Stsc211583g00004 275 MobiDBLite consensus disorder prediction 138 164 - -
Stsc211583g00004 275 MobiDBLite consensus disorder prediction 117 135 - -
Stsc211583g00004 275 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc211583g00004 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Stsc211583g00004 275 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc211583g00004 275 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Stsc211583g00004 275 SMART sant 69 117 IPR001005 -
Stsc211583g00004 275 SMART sant 16 66 IPR001005 -
Stsc211583g00004 275 CDD SANT 19 64 IPR001005 -
Stsc211583g00004 275 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc211583g00004 275 Pfam Myb-like DNA-binding domain 73 114 IPR001005 -
Stsc211583g00004 275 Gene3D - 74 118 - -
Stsc211583g00004 275 FunFam Myb transcription factor 17 69 - -
Stsc211583g00004 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Stsc211583g00004 275 Gene3D - 16 69 - -
Stsc211583g00004 275 MobiDBLite consensus disorder prediction 117 164 - -
Stsc211583g00004 275 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211583g00004 Stsc-Chr211583 50779 52515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211583g00004 14 157 MYB Transcription Factor Family AT3G30210 64.103 6.64e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211583g00004 Myb_DNA-binding 4.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211583g00004 K09422 - gmx:100816944 270.011