Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00012 ATGGTGGGGATCATAACAGCATTACTTCTTTGGTTCTTTCTTGTGTCTCACGTGATAACTGCCTCATCAACAGACAGTTTAGTAACGAGTCAATCCATTCGAGACGGCGACACGTTAATCTCGGCCGGTGGAAGTTTCGAGCTGGGTTTCTTTAGCCCCACGGAAACTTCCACAAGTAGGTATTTAGGTGTGTGGTACAGAGCTTCATCAGGGAATGCAACAATTGTGTGGGTTGCCAACAGAGGAAACCCCCTTCACAACAAGTTAGGAGCTTTAATGCTAAACAAAAATGGGATTCTTCACCTTCTTAGTAGCACAAACAAAACCATTTGGTCATCATCCAACATAGCAAGCAAGGCCAAATCCATGAGTAGCTCAATTGTGCAACTCTTGGATACAGGGAATCTTGTAGTGAAAGATGGACAAGATGCTAATAATAATGAGGTGAATCTTTTGTGGCAAAGTTTCGATTATCCCGGCGATACATTGATGCCTGGAATGAAGGTTGGATTGAACTTTGTTACAGGGAAGAATACATCTCTATCTTGCTGGAAAAGTGAAGAGGATCCGGCGGTAGGAGAATATTCTCTAAAATTTGATCCAAGAGGGTATCCACAACTAATGCAGATGAAAAGATCTGCTATAAGCATCAGACGAGGTTCATGGAATGGCCGTTATTTTACTGGATCTCCAGCTGAGGACATGCACAAATTCAAGACTGATTTCGTGTTCAACAAGAAAGAGGTGTATTATGAGTTCGAAATACTTGATACATCAATCTTCTCTGTGTTCAAAATGGACCCTTCTGGGAATACACAGATTATGGTTTGGGAAATTCAGACAAGAACTCCGGTCGAAGTTTCCATGATAAATGGGCCAAATGCATGTAAGAGTTATGCATTTTGTGGTCCAAATGCTTGGTGCTTTATGGATGGAAATTTCGCCATATGCCAATGCATGAAAGGATACACTCCCAAGTTTCCTCAGCAATGGAATGCATCACAATGGTCTGGTGGTTGTGTTGGAAAGACTCCATTGAAGTGTAATGATGATACAAATGGATTCTTCATGTATCAGTACATGAAAATGCCGGACACATCTACTTCATGGTTTAGCGAGATCATGAGCCTCGAGGAATGCCGAAACTCATGCCTGCAAAATTGTTCTTGTGTTGCTTATGCAAATTTGGATATCCAAAATGGAGGGAGTGGTTGTCTACTTTGGTTTGATCATCTTGTTGACGTGATGCAGTTTTTTAAGGCAGGTCAAGATCTTTACATTAAAGTCCCTGCTTCAGAACTAGATATTGACCCTGGACACAACATGAATATTAAACTGGGAATTGCAGCTGGTGTAATTTTCTTCGGATTAATCACAATTGTTAGCATAATCATAATTATAAAACCAGGGGCAACAAGGATATTATTATGCAGAAGGCGGCAACGACGGGCCGAAAACATTGATCTACCCACATTTGATTTCTCAATCCTAGCTAAAGCTACAGAAAACTTTTCAAGTAGTAACAAACTCGGAGAGGGTGGTTTTGGACCAGTATACAAGGGCACATTGACAGATGGTCAACATTTAGCAGTGAAAAGGCTTTCAAAAATGTCTACACAAGGATTGGAGGAGTTTAAAAATGAAGTGGTATTGATAGCTAAACTTCAACATCGCAATCTTGTGAAACTTCTTGGTTGCTGCATTCAAGGAGCAGAAAAAATGTTAATCTATGAATACATGCCTAACAAAAGCCTGGACTACTTTGTTTTTGATGAAATAAGGAGGAAGCTACTCGATTGGCATAAGCGTTTCAACATTATTAGTGGCATTGCTCATGGACTTGTTTATCTTCATCAAGATTCTAGACTAAGAATTATTCACAGAGATCTAAAAACCAGCAATATTTTATTAGATGCAAATATGAATCCAAAAATATCAGACTTTGGTCTAGCTCGAACATTCATAGGAGACCAAGCAGAGGATAAGACAGAGAGAGTGGTTGGAACATAG 2010 0.3995 MVGIITALLLWFFLVSHVITASSTDSLVTSQSIRDGDTLISAGGSFELGFFSPTETSTSRYLGVWYRASSGNATIVWVANRGNPLHNKLGALMLNKNGILHLLSSTNKTIWSSSNIASKAKSMSSSIVQLLDTGNLVVKDGQDANNNEVNLLWQSFDYPGDTLMPGMKVGLNFVTGKNTSLSCWKSEEDPAVGEYSLKFDPRGYPQLMQMKRSAISIRRGSWNGRYFTGSPAEDMHKFKTDFVFNKKEVYYEFEILDTSIFSVFKMDPSGNTQIMVWEIQTRTPVEVSMINGPNACKSYAFCGPNAWCFMDGNFAICQCMKGYTPKFPQQWNASQWSGGCVGKTPLKCNDDTNGFFMYQYMKMPDTSTSWFSEIMSLEECRNSCLQNCSCVAYANLDIQNGGSGCLLWFDHLVDVMQFFKAGQDLYIKVPASELDIDPGHNMNIKLGIAAGVIFFGLITIVSIIIIIKPGATRILLCRRRQRRAENIDLPTFDFSILAKATENFSSSNKLGEGGFGPVYKGTLTDGQHLAVKRLSKMSTQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGAEKMLIYEYMPNKSLDYFVFDEIRRKLLDWHKRFNIISGIAHGLVYLHQDSRLRIIHRDLKTSNILLDANMNPKISDFGLARTFIGDQAEDKTERVVGT 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00012 669 Pfam Protein kinase domain 505 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00012 669 SMART blect_4 30 159 IPR001480 -
Stsc211581g00012 669 Pfam D-mannose binding lectin 74 185 IPR001480 -
Stsc211581g00012 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 580 669 - -
Stsc211581g00012 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 156 - -
Stsc211581g00012 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 579 - -
Stsc211581g00012 669 Pfam PAN-like domain 348 415 IPR003609 -
Stsc211581g00012 669 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 659 - -
Stsc211581g00012 669 Gene3D Phosphorylase Kinase; domain 1 473 579 - -
Stsc211581g00012 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 347 429 - -
Stsc211581g00012 669 Gene3D - 18 156 IPR036426 -
Stsc211581g00012 669 ProSiteProfiles PAN/Apple domain profile. 348 431 IPR003609 -
Stsc211581g00012 669 Gene3D Transferase(Phosphotransferase) domain 1 580 669 - -
Stsc211581g00012 669 SUPERFAMILY Protein kinase-like (PK-like) 487 669 IPR011009 -
Stsc211581g00012 669 SMART serkin_6 504 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00012 669 Pfam S-locus glycoprotein domain 218 327 IPR000858 GO:0048544
Stsc211581g00012 669 SMART ntp_6 350 429 IPR003609 -
Stsc211581g00012 669 CDD PAN_AP_plant 344 430 - -
Stsc211581g00012 669 CDD B_lectin 30 159 IPR001480 -
Stsc211581g00012 669 Gene3D Hepatocyte Growth Factor 348 426 - -
Stsc211581g00012 669 ProSiteProfiles Protein kinase domain profile. 504 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00012 669 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 190 IPR036426 -
Stsc211581g00012 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Stsc211581g00012 669 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00012 Stsc-Chr211581 52836 55221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00012 452 669 Receptor kinase-like Gene Family AT4G05200 57.391 1.73e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211581g00012 Pkinase 4.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00012 - - adu:107464241 1164.83