Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00011 ATGCCTCCGGAGTATGTAGTGCACGGACAATACTCAATGAAGTCAGATGTTTTTAGCTATGGCGCGATTGTATTGGAGTTGGTAAGTGGGAAGAAAAATAGACAGTTCTCAGATCAAGAACACAACCTTAATCTTCTTGGACATGCTTGGAGATTATGGTCTAATGAGAGGCCATTGGAACTATTAGACGAAGTGTTAAAGGAAGGATGCACCCGTTCCGAAGTCATACAATGCATACAAGTGGGTTTGTTATGTGTGCAGCAAAGAGCAGAAGATAGGCCAGACATGTCATCAGTGGTTCTAATGCTAAATGGTGAGAAATTGTTGCCCAAGCCAAAAGTTCCTGGCCAATCTATCCAAGATGGTGAGACTTTGGTTTCTGCTGGTGGAAGCTTTGAATTGGGTTTCTTTAGTCCTGGGATTCCAACAAATAGATACTTAGGTGTTTGGTATAGAGATTCTTCAGGGAATTTAACAGTTGTGTGGGTTGCAAACAGAGACATACCAATTCAAAGCAACTCATCAGGTGTTTTGAAACTCACAGAGAATGGGAATCTTCAGCTTCAGAATGGCAGCACTAACAGCACCATTTGGTCTTCCAACACCTCGGTCAAAGCTTCAGGCGGCTCGATTGCGAAACTCTTGGATTCGGGGAATCTTGTAGTGCAAAATGGACAAAGTACTGAGGAGGAAAACTTTGTGTGGTAA 708 0.428 MPPEYVVHGQYSMKSDVFSYGAIVLELVSGKKNRQFSDQEHNLNLLGHAWRLWSNERPLELLDEVLKEGCTRSEVIQCIQVGLLCVQQRAEDRPDMSSVVLMLNGEKLLPKPKVPGQSIQDGETLVSAGGSFELGFFSPGIPTNRYLGVWYRDSSGNLTVVWVANRDIPIQSNSSGVLKLTENGNLQLQNGSTNSTIWSSNTSVKASGGSIAKLLDSGNLVVQNGQSTEEENFVW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00011 235 SUPERFAMILY Protein kinase-like (PK-like) 1 108 IPR011009 -
Stsc211581g00011 235 CDD B_lectin 117 235 IPR001480 -
Stsc211581g00011 235 SUPERFAMILY alpha-D-mannose-specific plant lectins 160 235 IPR036426 -
Stsc211581g00011 235 Pfam D-mannose binding lectin 159 235 IPR001480 -
Stsc211581g00011 235 SMART blect_4 116 235 IPR001480 -
Stsc211581g00011 235 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 93 - -
Stsc211581g00011 235 Pfam Protein tyrosine and serine/threonine kinase 1 101 IPR001245 GO:0004672|GO:0006468
Stsc211581g00011 235 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00011 235 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Stsc211581g00011 235 Gene3D - 115 235 IPR036426 -
Stsc211581g00011 235 ProSiteProfiles Bulb-type lectin domain profile. 110 235 IPR001480 -
Stsc211581g00011 235 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 113 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00011 Stsc-Chr211581 50978 52753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00011 1 120 Receptor kinase-like Gene Family AT4G23140 50.413 1.08e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211581g00011 PK_Tyr_Ser-Thr 8.6e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00011 - - vum:124842963 239.58