Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00008 ATGAGAACAATCACTTCAAGAGATAGTTTAGAAGAAGGCCAATCTATCCAAGATGGTGAGACTTTGGTTTCTGCTGGTGGAAGCTTTGAATTGGGTTTCTTTAGTCCTGGGATTCCAACAAATCGTTACTTAGGTGTGTGGCACCGAGATTCATCAGGGAATTCAACTGTTGTGTGGGTTGCGAATAGAGACATACCAATTCAAAGCAACTCATCAGGTGTTCTGAAACTCACAGAAAACGGGATTCTTCAGCTTGTGAATGGCAGCACTAACAGCACCATTTGGTCTTCCAACACCACAGGCAAAGCTTCGGGCGGCTCGATTGCGAAACTCTTGGATTCGGGGAATCTTGTAGTGCAAAATGGACAAAGTACTGAGGAGGAAAGCTTTTTGTGGCAAAGTTTTGATTATCCATGTGATACAGTGATGCCAGGAATGAAGCTTGGATTGAACTTTGTTACTGGTTTTGAGAGATCTTTGTCATCTTGGAAAAGTGCAGAGGATCCTGCTGTAGGAGAATATTCAATGAAGATTGATCCTAGAGGGTATCCACAAGTAATGGAATTCAAAGGATCTATTAAATATTTCCGAATCGGGCCATGGAATGGCCTTTATTTTCCTGGATATCTAACCCCGGAAGATCATAGACAACATTTTGTACTGGACAAAACCCAGGTGTATTCTGAGTTTGAAGTACTTGATAAATCCCTTTTCTTCCTGTATAAACTACAACCTTCAGGTAATAATATAGGTACTGTTTGGAAGAAATATGAAACAAGAACTGAGGTGGCAAGTGTGGCAGTTCCCACAATTGATGGATACAATGGGTGTGGAAGTTATGCCTTTTGTGGTTCAAATGCTATATGCATGGTTGATACTAGCATTCCAACATGTGAATGCCTAAAAGGATATGTTCCCAAGTTTCCCCAACAATGGGATATGTTAAATTGGTCTGATGGTTGTGTTAGGAAGAGTTCGTTGGATTGTAACAACACTAATAGCTTCTTAAGGTACTCAGAAATAAAAGTGCCAGACACTTCATCCTCATGGTATAACCAGACCATGAATCTTGAAGAATGCAATGACCATGAAAATTTGAAGAGGAAGAAGGTGGGAATTGCAGTTGGTGTGATCATTTTCGGATTGATCACATGTGTTTGCATAGTGATAATAAAACAACCAGGAGTTGCAAGAATAATTCAAAGAAATAGGCAAAGACAGAAGGTCACTGACCTACCAACATTTGATTTCTCAGTCTTAGTTAAAGCAACAGACAACTTTTCAAGTACTAAAAAAATTGGAGAAGGTGGTTTTGGATCAGTATACAAGGGCTCACTAACAAATGGCCAAGAGTTAGCTGTGAAAAGGCTTTCAAAAGATTCTAAACAAGGTTTAGAAGAGTTTAAAAATGAAGTGGCATTGATAGTGAAACTTCAACATCGTAATCTTGTAAAGCTTCTTGGTTGTTGCATTCAAGGAGTAGAAAAAATATTGGTGTATGAATATATGCCTAACAAAAGCTTAGACTACTTTGTTTTCGATGAAGTCAGAAAAAAGATGCTAGATTGGATTAAGCGTTTCAACATTATCGATGGCATTGCTCGGGGACTTCTTTATCTTCATCAAGATTCTAGATTGAGGATTATTCATAGAGATCTAAAAACCAGTAATGTTCTATTGGATGCAAATTTGAATCCTAAAATATCAGACTTTGGTCTAGCTCGGACATTCTTAGGCGATCAACTCGAGGCTAACACAAACAGAGTAGTCGGAACATAG 1779 0.3873 MRTITSRDSLEEGQSIQDGETLVSAGGSFELGFFSPGIPTNRYLGVWHRDSSGNSTVVWVANRDIPIQSNSSGVLKLTENGILQLVNGSTNSTIWSSNTTGKASGGSIAKLLDSGNLVVQNGQSTEEESFLWQSFDYPCDTVMPGMKLGLNFVTGFERSLSSWKSAEDPAVGEYSMKIDPRGYPQVMEFKGSIKYFRIGPWNGLYFPGYLTPEDHRQHFVLDKTQVYSEFEVLDKSLFFLYKLQPSGNNIGTVWKKYETRTEVASVAVPTIDGYNGCGSYAFCGSNAICMVDTSIPTCECLKGYVPKFPQQWDMLNWSDGCVRKSSLDCNNTNSFLRYSEIKVPDTSSSWYNQTMNLEECNDHENLKRKKVGIAVGVIIFGLITCVCIVIIKQPGVARIIQRNRQRQKVTDLPTFDFSVLVKATDNFSSTKKIGEGGFGSVYKGSLTNGQELAVKRLSKDSKQGLEEFKNEVALIVKLQHRNLVKLLGCCIQGVEKILVYEYMPNKSLDYFVFDEVRKKMLDWIKRFNIIDGIARGLLYLHQDSRLRIIHRDLKTSNVLLDANLNPKISDFGLARTFLGDQLEANTNRVVGT 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00008 592 Pfam D-mannose binding lectin 56 164 IPR001480 -
Stsc211581g00008 592 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 582 - -
Stsc211581g00008 592 SMART blect_4 13 138 IPR001480 -
Stsc211581g00008 592 SUPERFAMILY Protein kinase-like (PK-like) 408 592 IPR011009 -
Stsc211581g00008 592 Gene3D Transferase(Phosphotransferase) domain 1 503 592 - -
Stsc211581g00008 592 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 503 592 - -
Stsc211581g00008 592 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 393 502 - -
Stsc211581g00008 592 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 135 - -
Stsc211581g00008 592 Pfam S-locus glycoprotein domain 196 308 IPR000858 GO:0048544
Stsc211581g00008 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Stsc211581g00008 592 ProSiteProfiles Bulb-type lectin domain profile. 7 132 IPR001480 -
Stsc211581g00008 592 CDD B_lectin 14 138 IPR001480 -
Stsc211581g00008 592 ProSiteProfiles Protein kinase domain profile. 427 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00008 592 Gene3D Phosphorylase Kinase; domain 1 394 502 - -
Stsc211581g00008 592 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 169 IPR036426 -
Stsc211581g00008 592 ProSitePatterns Protein kinases ATP-binding region signature. 433 455 IPR017441 GO:0005524
Stsc211581g00008 592 Gene3D - 3 135 IPR036426 -
Stsc211581g00008 592 SMART serkin_6 427 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00008 592 ProSiteProfiles EGF-like domain profile. 273 310 IPR000742 -
Stsc211581g00008 592 Pfam Protein kinase domain 428 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00008 Stsc-Chr211581 43695 46230 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00008 372 592 Receptor kinase-like Gene Family AT4G23190 54.113 4.97e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211581g00008 Pkinase 5.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00008 - - adu:107464241 899.812