Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00007 ATGCCTCCCGAGTATGCACTACATGGACAATATTCAATGAAGTCTGATGTTTTTAGTTACGGTGTCATAGTACTAGAATTGATAAGTGGGAAGAAGAGTAGAGAATTCTCAGATCCAGAGAGCTACCTTAATCTTCTTGGACACGCATGGAGATTATGGACTGATGAGAAGCCATTGGAACTGCTAGATGAAGTGTTAAAGGAAGGGTGCACAGCACCTGAAGTAGAAAGATGCATACAAGTGGGTTTGTTATGTGTGCAACAAAGACCAGAAGATAGGCCAGACATGTCATCAGTGGTTCTAATGTTGAAGGGTGAGAAACTACTGCCCAAGCCAAAGGTTCCTGGTTTTTATACTGAAGCATATTCTTTGATGGAATCTCCCACATTGTTTTCAGCCAATGAAATCTCCATCACATCATTATATGCAAGATAG 435 0.4092 MPPEYALHGQYSMKSDVFSYGVIVLELISGKKSREFSDPESYLNLLGHAWRLWTDEKPLELLDEVLKEGCTAPEVERCIQVGLLCVQQRPEDRPDMSSVVLMLKGEKLLPKPKVPGFYTEAYSLMESPTLFSANEISITSLYAR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00007 144 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Stsc211581g00007 144 Pfam Protein tyrosine and serine/threonine kinase 1 101 IPR001245 GO:0004672|GO:0006468
Stsc211581g00007 144 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00007 144 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 138 - -
Stsc211581g00007 144 SUPERFAMILY Protein kinase-like (PK-like) 1 123 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00007 Stsc-Chr211581 42989 43611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00007 1 144 Receptor kinase-like Gene Family AT4G23140 47.097 1.74e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211581g00007 PK_Tyr_Ser-Thr 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00007 - - aip:107614885 263.848