Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00005 ATGGGTGGAGATGTTGCAACATGTGAATGCTTGAAAGGATTTACTCCAAAGTTTCCTGAAAAATGGTACATATCAGATTGGTCTAGTGGTTGTGGTAGAAAGGTTGCATTGGACTGTGATGATGTTGTAGGGTTCTTGAAGTGCAGTGACATGAAATTGCCAGACACATCTGCTTCATGGTATAGTGAGACAATGAACCTTGAAGAATGTCAAAAGTTATGTCTAAAAAACTGTTCTTGTGCAGCATATGCAAGTTTGGATATCCGCAATGGAGGAAGTGGTTGTCTGCTTTGGTTTGGTAATCTTATTGACATGATGCAATTCTCAAAAGGGGGTCAAGACCTTTACATCAAAGTCCCTGCTTCAGAATTAGATCATATTGCAGATAATAGCCATGGAAATACAAATAAAAAGAAGATAAGCATTGCAGTTGGTGTGAGTATTTTTGGGTTAGCCACATCCATCGCCATAATAACAATAATTAGAAATCCAGCAAGAATACTTTACAGACATAAGCAAAGACAGGAAGATATCAACCTACCAAAATTTGATTTCTCAGTCTTAGCTAAAGCTACTGAAAACTTCTCAATCAATAATAAACTTGGAGAAGGTGGTTTTGGATCGGTATACAAGGGAACGATGATAGATGGCCAAGTGATAGCTGTGAAAAGACTTTCTAAAAAATCCAGGCAAGGGTCGGAAGAGTTCAAGAATGAAGTGATGTTGATAGCTAAACTTCAGCACCGTAATCTTGTGAAGCTTCTCGGCTACTGCATTCAAGGAGAAGAAAAAATATTAATCTATGAGTATATGCCTAACAAAAGCTTGGATTACTTTGTTTTTGATGACGCAAGAAGAAAGTTGCTAGATTGGCCTAAACGATTCAACGTTATTGGTGGTATTGCTCGAGGACTTCTTTATCTTCATGAAGATTCTAGACTGAGGGTTATTCATAGAGATTTAAAAACCAGCAATATCCTTCTAGATGTTGATTTGAATCCTAAAATATCAGACTTTGGGTTGGCTCGAACATTCTCATGTGATCAAGTCGAGGCTAACACCGAAAGGGTGGCCGGAACATAG 1083 0.3813 MGGDVATCECLKGFTPKFPEKWYISDWSSGCGRKVALDCDDVVGFLKCSDMKLPDTSASWYSETMNLEECQKLCLKNCSCAAYASLDIRNGGSGCLLWFGNLIDMMQFSKGGQDLYIKVPASELDHIADNSHGNTNKKKISIAVGVSIFGLATSIAIITIIRNPARILYRHKQRQEDINLPKFDFSVLAKATENFSINNKLGEGGFGSVYKGTMIDGQVIAVKRLSKKSRQGSEEFKNEVMLIAKLQHRNLVKLLGYCIQGEEKILIYEYMPNKSLDYFVFDDARRKLLDWPKRFNVIGGIARGLLYLHEDSRLRVIHRDLKTSNILLDVDLNPKISDFGLARTFSCDQVEANTERVAGT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00005 360 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Stsc211581g00005 360 Gene3D Transferase(Phosphotransferase) domain 1 271 360 - -
Stsc211581g00005 360 ProSiteProfiles PAN/Apple domain profile. 39 121 IPR003609 -
Stsc211581g00005 360 CDD PAN_AP_plant 35 120 - -
Stsc211581g00005 360 Gene3D Hepatocyte Growth Factor 37 117 - -
Stsc211581g00005 360 SMART ntp_6 40 119 IPR003609 -
Stsc211581g00005 360 ProSiteProfiles Protein kinase domain profile. 195 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00005 360 Pfam Protein kinase domain 196 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00005 360 SUPERFAMILY Protein kinase-like (PK-like) 178 357 IPR011009 -
Stsc211581g00005 360 Pfam PAN-like domain 42 105 IPR003609 -
Stsc211581g00005 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 271 360 - -
Stsc211581g00005 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 38 119 - -
Stsc211581g00005 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Stsc211581g00005 360 Gene3D Phosphorylase Kinase; domain 1 162 270 - -
Stsc211581g00005 360 SMART serkin_6 195 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00005 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 162 270 - -
Stsc211581g00005 360 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00005 Stsc-Chr211581 39552 41270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00005 182 360 Receptor kinase-like Gene Family AT4G05200 65.922 1.25e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211581g00005 Pkinase 4.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00005 - - aip:107614884 662.914