Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00004 ATGGCCTGCATGAGAACCACTACTTCATCAGACACCCTAGGATTGGATCAATATATCCGAGACGACGAATCTTTAGTCTCAGCTGGTGGAAGCTTTGAACTTGGTTTCTTCAGCCCCGGAACTTCGACAAATCGATATTTGGGTGTGTGGTACAGAGATACATCAGGAAATCCAACAGCTGTGTGGGTGGCTAACAGAGAAAGACCTCTTCACAACAAGTCAGGAGTTTTGCAACTCAACAAAATGGGGATTCTTCAGCTTCTTGATGAGTCAAACAACACTGTTTGGTCATCCAACATATCCAGTAAATCATGGAGTAACTCAGTTGCAAGGATTTTGGATTCGGGTAATTTTGTAGTGACAAATGGACAAGATACTTATAACAGCAGCTTTTTGTGGCAGAGTTTTGATTACCCTTGTGACACACTGATGCCTGGAATGAAGATTGGATGGAACTTTGTTACTGGTCAAGAAAAATATGTATCAAGCTGGAAAAGTGAAGAAGATCCTGCTGTGGGAGATTATGCTATAAAACTTGATCCTAGAGGATATCCACAAATAATGATAATGAACGGATCTCTTATATATTTCAGAGGTGGATCATGGAATGGCCTTTATTTTACTGGATCTCCATCTCAGAACACACAAACATTTAAATCCAATTTTGTATTGAATGGAAAAGCGGTGTATTATGACTTTGAAATGCTTGATACTTCCATTTTTACAGTACTTAAAGAATACTCTTCAGGTGATGGACAATATCTGGTTTGGACAAGCCAAACAAGAAACAAGGTGCAAGCTACTGAGGTTGCAAATCAAGGAGGGTGTGACAGGTATGCCTATTGTGGTCCAAATTCTATATGCATTGTTGATAGTAATGTTGCAATATGCAAATGTCTGAAAGGATATGTTCCCAATCCCAAGGTTTCTAAACCAGAAAATATGTCATATTGGTCCAATGGTTGTGTTAGAAAGGATGCACTGGATTGTAATAACACCGATGGCTTCTTGAGCTACACAGGCATAAAATTGCCAGACACATCTACTTCATGGTATAGTGAGACAATGAACCTCCAGGAATGTCAAAAGTTTTGCCTGAAAAACTGTTCTTGTTCAGCATATTCAAGTTTGGATATTCGTAACGGTGGAAGCGGTTGTCTAATTTGGTTTGATAATCTTACTGACATTATACAATTCTCACAAGGGGGTCAAGACTTTTACCTAAGAGTCCCTTCTTCAGAATTGGCTGCTAATGGCCATGGAAACATCAAGAAAAAGAAGGTAGGAATTGCAGTTGGTGTGATTATGTTCGGATTAATCACATGTATCAGCATAATGATTATACATCCAGGGACAAGGAAAATAATTTACGGAGAAAAAGAGATGCAAGAAAATAATGATCTACCAGCATTTAATTTCTCAGTCTTAGCTAAAGCTACAGAAAACTTTTCAAGCAGTAACAAACTTGGAGAAGGAGGTTTTGGAGAAGTATACAAGGGTACATTGACTGATGGTCAAGAGTTAGCTGTAAAAAGACTTTCAAAAAAGTCTGGCCAAGGGTTGGAAGAGTTCAAAACCGAAGTAGCCTTGATAGCGAAACTTCAGCATCGTAATCTTGTAAAGCTTCTTGGTTTTTGCATTCAAGGAGTAGAAAAAATATTGGTCTATGAATACATGCCAAACAAAAGCCTCGACTACTTCATTTCCGTTTTGAATTCTACAAGTGATAAACTAAGCATGGATACTTTGTTGTTAGATGAAACTAGAAGGAAGCTGCTAGATTGGCCTAAACGTTTCAACATTATTAGCGGCATTGCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGACTAAGGATTATTCATAGAGACCTAAAAACCAGCAACATTTTGCTAGATGCAAATTTGAATCCTAAAATATCAGACTTTGGCTTGGCTCGAACATTCTTAGGTGATCAAGAGGAAGCTAACACAAACAGGGTAGCTGGAACATATGGTTACATGCCTCCTGAGTATGCAGTACACGGGCAATTCTCAATGAAGTCTGATGTGTTTAGCTATGGTGTGATAGTACTAGAGTTGTTAAGTGGGAAGAAGAATAGGGAATTCTCCGACCCGGAAAACTACCTTAATCTTCTTGGACATGCATGGAGATTATGGACTGATGAGAGGCCATTGGAGCTATTGGATGAATTGTTAAAGGAAGGACCATGCACCCATTCCGAAGTCATAAGATGCATACAAGTGGGGCTATTATGTGTGCAACAAAGACCAGAAAACAGACCAGACATGTTATCTGTGGTTCTAATGCTAAATGGTGAGAAATTGCTACCCAAGCCACAGGTCCCTGGTTTTTATATTGAAAGAGGTGTTACAATTGAAGCAGATCCTGTGTTGGGAAATGACACACCATTTTCAGCCAATGAAATTTCCATGACATTGTTAGATGCAAGATAG 2457 0.3899 MACMRTTTSSDTLGLDQYIRDDESLVSAGGSFELGFFSPGTSTNRYLGVWYRDTSGNPTAVWVANRERPLHNKSGVLQLNKMGILQLLDESNNTVWSSNISSKSWSNSVARILDSGNFVVTNGQDTYNSSFLWQSFDYPCDTLMPGMKIGWNFVTGQEKYVSSWKSEEDPAVGDYAIKLDPRGYPQIMIMNGSLIYFRGGSWNGLYFTGSPSQNTQTFKSNFVLNGKAVYYDFEMLDTSIFTVLKEYSSGDGQYLVWTSQTRNKVQATEVANQGGCDRYAYCGPNSICIVDSNVAICKCLKGYVPNPKVSKPENMSYWSNGCVRKDALDCNNTDGFLSYTGIKLPDTSTSWYSETMNLQECQKFCLKNCSCSAYSSLDIRNGGSGCLIWFDNLTDIIQFSQGGQDFYLRVPSSELAANGHGNIKKKKVGIAVGVIMFGLITCISIMIIHPGTRKIIYGEKEMQENNDLPAFNFSVLAKATENFSSSNKLGEGGFGEVYKGTLTDGQELAVKRLSKKSGQGLEEFKTEVALIAKLQHRNLVKLLGFCIQGVEKILVYEYMPNKSLDYFISVLNSTSDKLSMDTLLLDETRRKLLDWPKRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLNPKISDFGLARTFLGDQEEANTNRVAGTYGYMPPEYAVHGQFSMKSDVFSYGVIVLELLSGKKNREFSDPENYLNLLGHAWRLWTDERPLELLDELLKEGPCTHSEVIRCIQVGLLCVQQRPENRPDMLSVVLMLNGEKLLPKPQVPGFYIERGVTIEADPVLGNDTPFSANEISMTLLDAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00004 818 ProSiteProfiles Bulb-type lectin domain profile. 10 133 IPR001480 -
Stsc211581g00004 818 Pfam D-mannose binding lectin 59 165 IPR001480 -
Stsc211581g00004 818 SUPERFAMILY Protein kinase-like (PK-like) 466 771 IPR011009 -
Stsc211581g00004 818 Pfam S-locus glycoprotein domain 197 306 IPR000858 GO:0048544
Stsc211581g00004 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 451 558 - -
Stsc211581g00004 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 170 IPR036426 -
Stsc211581g00004 818 SMART blect_4 16 139 IPR001480 -
Stsc211581g00004 818 SMART ntp_6 331 410 IPR003609 -
Stsc211581g00004 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 758 - -
Stsc211581g00004 818 CDD STKc_IRAK 489 773 - -
Stsc211581g00004 818 Gene3D - 5 136 IPR036426 -
Stsc211581g00004 818 Pfam Protein tyrosine and serine/threonine kinase 486 767 IPR001245 GO:0004672|GO:0006468
Stsc211581g00004 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 329 410 - -
Stsc211581g00004 818 Pfam PAN-like domain 330 396 IPR003609 -
Stsc211581g00004 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 779 - -
Stsc211581g00004 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Stsc211581g00004 818 Gene3D Transferase(Phosphotransferase) domain 1 561 777 - -
Stsc211581g00004 818 SMART serkin_6 483 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00004 818 CDD PAN_AP_plant 328 411 - -
Stsc211581g00004 818 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Stsc211581g00004 818 ProSiteProfiles PAN/Apple domain profile. 330 411 IPR003609 -
Stsc211581g00004 818 Gene3D Hepatocyte Growth Factor 326 408 - -
Stsc211581g00004 818 ProSiteProfiles Protein kinase domain profile. 483 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00004 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 5 136 - -
Stsc211581g00004 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Stsc211581g00004 818 Gene3D Phosphorylase Kinase; domain 1 452 558 - -
Stsc211581g00004 818 CDD B_lectin 16 139 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00004 Stsc-Chr211581 34384 38022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00004 471 818 Receptor kinase-like Gene Family AT4G23140 55.432 3.09e-127 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211581g00004 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00004 - - aip:107614884 1487.63