Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211581g00001 ATGGGGTTGAAGCTGATTCTGCTTCTGATTAATCTACATTTAGTGCTGAGCACTCAACAGCTTCATGAATATGAAGCCACAAAACCACACCATTCCAGAGCAAGTAATCAGTTTAGTATTGCAATCCCACCATCAAAGTCAACTTCTGGAGTTTCTGAAAGCACTGCACATGCACCTTCAAAATCAGCTTCCAGTGTTCCTGTGAGTATTGCAATGCCTCCTTCTAAGCCAATTCAAAGAACTCATGCAAGGAAATGGACACATAGTTCTGTAGATTCTCCTCCTGTATCACATCATAAGCATCACCATTCAGGAAAAAGGTCCGGCAACCTGATCCCTGCGGCTGCGCCGGCCTATCCGATCCATCCTCCTACTTACAGCTATCAAGGTCCTTCAGTCTCTAAATTGCAACCTCCATTCTCTTCACCAATGAACCATGATTTTCGCGCACCTGTACCTGCACCGTCACCGGTGACTATGTCAAGCCACCTTAACGTGCCCTCTTCTTCACCTAGAATTGCTCCTCTGAGTTCATCATTTAAGAAGGCTAAGGCTCAGCCACCAGCTGCATATTCTTTTGTTTTGCCACCTCCACCTCCTAATAAGGATTGTTTGTCCATGACTTGCTCTGATCCCTTGACATACACGCCTCCCGGTTCGCCTTGTGGTTGTGTATTACCTCTTCAAGTAAACCTCCAAATTGGCATTGCAATATCCAAGTTTTTCCCTCTAGTTACAAAGCTGGCTGAGGAAATTGCAGATGGTCTTTCGCTGAATCGCAGCCAAGTTCGCATTGTTGGAGCTGATGCTGCTAATCTACAACTAGAGAAAACCAATGTTCTCATAAACTTGGTACCAACAGGAGTAAAATTCAATGATACCACTGCTTTTTCTATATACCAGAAATTCTGGCACAAGAAAGTTCTTAGGCATGCTTCACTATTTGGTTCTTATGAAGTTCTCTATGTCCAATACCCAGGTCTTCCACCATCGCCACCCTCCGCGTCTGGTGATATAGACAATGGGCCATATACCGGTGGCGATAACAACGGAACGATAATGAAACCTTTAGGAGTAGATGTCTCAGGGAAGACAAAAGGAGAGAGTAATAAAGGGAGAATGATTGTTGTAATAGTACTGTCATCAGTTACTGCTTTTGTTATATTCATTGGACTTGCTTGGCTTGCTTTGTTGAAGTATAGTTCATGTGTCATCAAACCAGAACTAGGTCCAGATGTTTTGGTTTCACCCTCTTCAAAACAATCTGGTACTCCTACAGAATTGGCTCATGGGAAAATGCAAAGTTCAGGATCACTGTCCTTCAATTCAGGGTCAATAACATACACAGGAGCTGCTAAGATTTTTTCATTGAATAAGTTAGAGAAAGCAACAAATAACTTTGACTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGTCTTGTATACAAGGGAATTCTAAATGATGGGAGGGATATAGCAGTGAAGATCCTTAAAAGAGATGATCAGCGAGGTGGTCGCGAGTTCTTGGCTGAAGTCGAGATGCTTAGCCGGCTGCATCATAGAAATTTAGTTACATTGTTAGGTATATGCATAGAGAGAAAGACTAGGTGCCTAGTCTATGAACTAGTCCCTAATGGAAGTGTGGAATCTCATCTACATGGCGCTGACAAGGAAACTAGTCCACTAGATTGGAATTCGCGAATGAAGATTGCACTTGGTGCAGCTAGGGGATTGGCTTATCTCCATGAGGATTCAAATCCATGTGTCATACACAGGGATTTCAAGTCCAGCAACATCTTGTTAGAAGATGATTTTACACCAAAAGTTTCAGATTTCGGATTGGCTAGAACAGCGTTGGACGAGGGAAACAAGCATATCTCCACACATGTTATGGGAACATTTGGATACTTGGCTCCTGAATATGCAATGACAGGCCATCTTCTTGTAAAGAGTGATGTTTACAGCTATGGAGTAGTACTACTTGAGCTCCTAACAGGAAGAAAGCCTGTGGATTTCTCGCAACCACCGGGTCAAGAAAACCTTGTAAATTGGGCTCGTCCGCTTCTTACAAGCAAGCAGGGCTTAGAGATGATCATAGATCCTGTTGTGAAGCCTAGCGTTCCTGCTGACACTATGTTAAAAGTCTCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTGTCTCAAAGACCATTCATGGGGGAAGTTGTTCAAGCATTGAAGCTAGTATGCAATGAATTTGAGGAAACAGGTGATGTCAGATCAAGGAGTTTTCAAGAAGGAAGTAGTCTCCTAACTGACATGGAAGTTAAATTATCCGGTGTTTCGGACGAGGGGGAGGATTTTTCCGGGTTTCACACACCGTTGTATGGCTACCAATCCGGCGAGGAAAAGGTAGCATTATCAGCAACAGATTTGCTCAGTACTTCAGGCCAAGAATTTGAATCTTTCAGGAGGCATTCTTCTTCAGGGCCTTTGACTAGTGGAAGGAAGAAAAAGTTCTGGCAGAAGTTGAGAAGCATGTCCAGAGGAAGCACCAGTGAGCATGGATTTTCAACTAAACTATGGCCTGGATCCCATTGA 2583 0.4332 MGLKLILLLINLHLVLSTQQLHEYEATKPHHSRASNQFSIAIPPSKSTSGVSESTAHAPSKSASSVPVSIAMPPSKPIQRTHARKWTHSSVDSPPVSHHKHHHSGKRSGNLIPAAAPAYPIHPPTYSYQGPSVSKLQPPFSSPMNHDFRAPVPAPSPVTMSSHLNVPSSSPRIAPLSSSFKKAKAQPPAAYSFVLPPPPPNKDCLSMTCSDPLTYTPPGSPCGCVLPLQVNLQIGIAISKFFPLVTKLAEEIADGLSLNRSQVRIVGADAANLQLEKTNVLINLVPTGVKFNDTTAFSIYQKFWHKKVLRHASLFGSYEVLYVQYPGLPPSPPSASGDIDNGPYTGGDNNGTIMKPLGVDVSGKTKGESNKGRMIVVIVLSSVTAFVIFIGLAWLALLKYSSCVIKPELGPDVLVSPSSKQSGTPTELAHGKMQSSGSLSFNSGSITYTGAAKIFSLNKLEKATNNFDSSRILGEGGFGLVYKGILNDGRDIAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVTLLGICIERKTRCLVYELVPNGSVESHLHGADKETSPLDWNSRMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEDDFTPKVSDFGLARTALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVNWARPLLTSKQGLEMIIDPVVKPSVPADTMLKVSAIASMCVQPEVSQRPFMGEVVQALKLVCNEFEETGDVRSRSFQEGSSLLTDMEVKLSGVSDEGEDFSGFHTPLYGYQSGEEKVALSATDLLSTSGQEFESFRRHSSSGPLTSGRKKKFWQKLRSMSRGSTSEHGFSTKLWPGSH 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211581g00001 860 Gene3D Phosphorylase Kinase; domain 1 441 542 - -
Stsc211581g00001 860 MobiDBLite consensus disorder prediction 839 854 - -
Stsc211581g00001 860 ProSiteProfiles Protein kinase domain profile. 467 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211581g00001 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Stsc211581g00001 860 ProSitePatterns Protein kinases ATP-binding region signature. 473 495 IPR017441 GO:0005524
Stsc211581g00001 860 CDD STKc_IRAK 473 741 - -
Stsc211581g00001 860 PANTHER OS01G0750732 PROTEIN 196 762 - -
Stsc211581g00001 860 SUPERFAMILY Protein kinase-like (PK-like) 447 740 IPR011009 -
Stsc211581g00001 860 Gene3D Transferase(Phosphotransferase) domain 1 543 761 - -
Stsc211581g00001 860 FunFam receptor-like serine/threonine-protein kinase ALE2 440 542 - -
Stsc211581g00001 860 MobiDBLite consensus disorder prediction 27 108 - -
Stsc211581g00001 860 FunFam Receptor-like serine/threonine-protein kinase ALE2 543 760 - -
Stsc211581g00001 860 MobiDBLite consensus disorder prediction 839 860 - -
Stsc211581g00001 860 MobiDBLite consensus disorder prediction 415 435 - -
Stsc211581g00001 860 MobiDBLite consensus disorder prediction 31 69 - -
Stsc211581g00001 860 Pfam Protein tyrosine and serine/threonine kinase 470 740 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211581g00001 Stsc-Chr211581 971 5059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211581g00001 201 855 Receptor kinase-like Gene Family AT5G56890 57.186 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc211581g00001 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211581g00001 - - gmx:100814040 1192.18