Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00009 ATGATGATGTTAAGAGAAGAAACCGTTGGTTCAGTAAGCGCGCGCCACAGCTCCACCACCAGCACCGTCGGCGGCACCAGAATCTCCGCTGTATCGGTCAACAAGGTTCTGGTCGCGGTCAAGGCGGAGAAGGTAATCTCCAATACGGCACTAGCTTGGGCTCTCACTCACGTCGTTCACTCCTCCGATTCCATCACGCTTCTCGCCGTTTATTCCGCCGAGAAAACCGGTAGAAGGTTCTGGAACTTTTCGAGGTTGCGTGGAGATTGTTCGAGCGGAATAAACGCCGGGAAGCTTCCGGAGAGGATTAACGATATCTCGGAGTCTTGTGCTCAGATGGTGCTTCAGCTTCACAATCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTAACTGGTACTCCAAGTGGTGCTGTAGCAGCTGAAGCCAGATGGAGTGGCTCTCATTGGGTCATACTGGACAAGAAGTTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATTGTGGTAATGAAAGGCTCAAAACCAAAAGTTCTAAGGCTTAACTTAGGATGCTCTGATGAACTCCAAACTCCATTTTTCTCTGCTGCTACTTCACCAGATATAGCAATTGGAAAGTTCAAAGGCCGCAGATTGAAGCATTCAACCCCAGTGAGTAGCCCTGAAGAAGCAGGTACTTCTGCCACCAGAACCATTGGAGTTGACTCAGAGTCAAGTTCTGACTCAATGGCTTCTCTTTTCCAAGTCTATGAGCAAAATCCACTGTACGAGGGTCAGGGACTGCACAACAAAAGAACACACAAACCAATCAATGACCCCAAAGAGTTCAACTTCCAGCCACAATTATACTTTGATTTGGAAAAGGATTGCCCTCCCACAATGGGGACACATCCAATCCCATATGCATCAAGTGATAACAAGGATGTATTTTGGACTCCTCCTCAAAACCACATTTGGAATGAGAAGATTCAGAAAACAGAAAAGAACAGCTTTACCCAAAGAACCAAATCTCCAACTCCCAAAACACTACTTGAGAATTTTAGACATTGTGATCAAGAAATGAAAAGGACAAATAATGAACTTGGGTTTAACCAATCTCAAAGCAGAGTTTATGCTTCCAACTTGGGCAACAGAGGTAATGGCACCATTCCTATGGGCAGAACTTCCTGTATACCTCCTCCCTTGTGCTCTCAGTGTCAGAACAAAGCACCAGTGTTCGGAAAGCCTCCTAGACAGTTTTCTTTCAAGGAGATAGAGGAAGCTACTGATATGTTCTCAGATGCCAATTTTTTAGCTGAAGGTGGATTTGGTATTGTTCACAAAGGAATTCTCAGAGATGGGCAGGTTGTTGCTGTGAAACAGTTAAAGTTCGGAGGCTCTCAAGCCGATCTTGATTTCTGCAGGGAAGTTCGTGTTTTGAGCTGTGCACAACACAGAAATGTTGTGTTGTTGATAGGATTTTGTGTAGAGGCCAATTTGAGAATATTAGTCTATGAGTACATATGCAATGGATCCTTGGACCTTTACTTACATGGAGATGAGAATACACCCTTGGATTGGAACTCACGGTTGAAGATAGCAATTGGAGCTGCAAGAGGGTTACGCTACCTTCATGAAGATTGCAGAGTTGGTTGCATAGTGCACAGAGACTTTAGACCCAGAAATATTCTCTTAACGCATGACTTTGAACCTTTGGTGGCTGATTTTGGGCTTGCTAGATGGCACTCAGAATGGAATATAAACCCCGAACAAGATCGAGTTGTAGGAACGTCAGGGTATCTTGCCCCAGAGTATCTTGAAGCTGGAAATCTTACATACAAAGTAGATGTGTATGCATTTGGCATCGTTTTACTAGAGTTAATAACAGGTCGAAGAATAAGTGACTTGGAACAATATAATGGGCACTCATTTCTTTCTCAATGGTTTCATCCCATACGCATGTTAGAGCCAGATCATATATTGCAAAACGTTCGTTCTCTTAACCCATACTTGGGCTTTGAGGCTTCATTGGAATTTAATCTTCATTTACAAGCCATGGCAAGAGCTGCTTCATTGTGTCTACGTCTGGATCCTGATGCAAGACCTCCAATGTCCAAGATACTGAGAGTACTGGAAGGGGGTGATGCAGTTCGTCCTATTGGTTTAGACTTCAATTCAGTTGGTAATAGAAGTGGCCATTTAAGTGGTTTGAGTTCTCACACTCCACCTAAAGGTACTATAAGTCATTCTCGTAAGTTATCACATTGA 2256 0.4379 MMMLREETVGSVSARHSSTTSTVGGTRISAVSVNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAEKTGRRFWNFSRLRGDCSSGINAGKLPERINDISESCAQMVLQLHNQIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMKGSKPKVLRLNLGCSDELQTPFFSAATSPDIAIGKFKGRRLKHSTPVSSPEEAGTSATRTIGVDSESSSDSMASLFQVYEQNPLYEGQGLHNKRTHKPINDPKEFNFQPQLYFDLEKDCPPTMGTHPIPYASSDNKDVFWTPPQNHIWNEKIQKTEKNSFTQRTKSPTPKTLLENFRHCDQEMKRTNNELGFNQSQSRVYASNLGNRGNGTIPMGRTSCIPPPLCSQCQNKAPVFGKPPRQFSFKEIEEATDMFSDANFLAEGGFGIVHKGILRDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCVEANLRILVYEYICNGSLDLYLHGDENTPLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDFRPRNILLTHDFEPLVADFGLARWHSEWNINPEQDRVVGTSGYLAPEYLEAGNLTYKVDVYAFGIVLLELITGRRISDLEQYNGHSFLSQWFHPIRMLEPDHILQNVRSLNPYLGFEASLEFNLHLQAMARAASLCLRLDPDARPPMSKILRVLEGGDAVRPIGLDFNSVGNRSGHLSGLSSHTPPKGTISHSRKLSH 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00009 751 ProSitePatterns Tyrosine protein kinases specific active-site signature. 549 561 IPR008266 GO:0004672|GO:0006468
Stsc211579g00009 751 ProSiteProfiles Protein kinase domain profile. 428 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211579g00009 751 MobiDBLite consensus disorder prediction 216 240 - -
Stsc211579g00009 751 Gene3D HUPs 11 180 IPR014729 -
Stsc211579g00009 751 PANTHER OS01G0750732 PROTEIN 352 709 - -
Stsc211579g00009 751 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 400 503 - -
Stsc211579g00009 751 SUPERFAMILY Protein kinase-like (PK-like) 409 707 IPR011009 -
Stsc211579g00009 751 Pfam Protein tyrosine and serine/threonine kinase 433 662 IPR001245 GO:0004672|GO:0006468
Stsc211579g00009 751 Gene3D Transferase(Phosphotransferase) domain 1 504 714 - -
Stsc211579g00009 751 Gene3D Phosphorylase Kinase; domain 1 397 503 - -
Stsc211579g00009 751 MobiDBLite consensus disorder prediction 222 240 - -
Stsc211579g00009 751 FunFam Os07g0541700 protein 504 593 - -
Stsc211579g00009 751 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211579g00009 751 MobiDBLite consensus disorder prediction 729 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00009 Stsc-Chr211579 63362 68197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00009 416 708 Trihelix Transcription Factor Family AT5G38560 44.295 2.13e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc211579g00009 PK_Tyr_Ser-Thr 3.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00009 - - gmx:100813141 1184.47