Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00008 ATGCAAACCTTGTTAGCATCATCACCTCCTAATAACAAATTTCAAGGACCAGATTTGTCCTTAAACATAAGCCCTCCATGTGTTTCAGATTCTGAAAACATGAACATGTTCCTAAGTAGTAGTAAGAAAATTCTTTACAATGATATAAGTTCTTCAACTTCAGATTCAGGTAGTAGTTGTGGGAGTGCAAGTGATTTGAGCCATGAAAACAACAACCTTCTTCATCATGAACCTACATTGAGCTTAGGAGTTGAAGCTACAACAACATTAGATTTGAATAATAATAATAATAATCATAATAATAATAATTACCATCATCATCTTCATCAAGGTATTTCTAGAAGCTTCAATAATAATAATAATAATCACAATCACCATTTCCAACCTCAAATCTATGGCCGTGGTGAGTTCAAGAGAAGCTCGAGGGTCATTAATGGAGTCAAGAGGAGTGTGAGAGCACCTAGGATGAGATGGACAACAACCCTCCATGCCCATTTTGTTCATGCTGTTCAACTCCTTGGTGGCCATGAAAGGGCAACTCCAAAGTCAGTTTTAGAGCTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAAAGTCACTTACAGATGTATAGAACAGTGAAGAGCACTGACAAAAGCACAGGTCATGGGCAGACGGATATGGGTTTAAGCCCAATAATGCCAAGGATTAATAATAATGTTTCTCATTTGCATGGCAACAATGGAGTTTCAACTTGTGATGATGATGGTAATGAGAGACCAAATAATTTACCGCATCCACCACAAAATTATTCCCAAAGGGCATCATGGCAATCATCAATGGAGGCAAATACAAACAATAGTAGACAAAAACCTCAAATTGGTTTGACGTATTCTCATATAAAGGGAAATGGAACCATGGTGGAAGAGCACAATTGTGGGAGCATGTCTAATTGCATGAAGGAGAAGTTGTTGGATTCTACTCCATTGTCAAGTTCTGATGAAGAGGTTATGCTTGATCTTGAATTCAGCCTTGGAAGGCCAAACTGGGAAAAAGAACATCATCATCAAAAGGAAGAATCATCAAGAGTAGAGTTAACCCTTCTCAAATGTTAA 1098 0.377 MQTLLASSPPNNKFQGPDLSLNISPPCVSDSENMNMFLSSSKKILYNDISSSTSDSGSSCGSASDLSHENNNLLHHEPTLSLGVEATTTLDLNNNNNNHNNNNYHHHLHQGISRSFNNNNNNHNHHFQPQIYGRGEFKRSSRVINGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTGHGQTDMGLSPIMPRINNNVSHLHGNNGVSTCDDDGNERPNNLPHPPQNYSQRASWQSSMEANTNNSRQKPQIGLTYSHIKGNGTMVEEHNCGSMSNCMKEKLLDSTPLSSSDEEVMLDLEFSLGRPNWEKEHHHQKEESSRVELTLLKC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00008 365 FunFam Myb family transcription factor 152 210 - -
Stsc211579g00008 365 SUPERFAMILY Homeodomain-like 151 208 IPR009057 -
Stsc211579g00008 365 Gene3D - 153 210 - -
Stsc211579g00008 365 MobiDBLite consensus disorder prediction 239 284 - -
Stsc211579g00008 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 154 207 IPR006447 GO:0003677
Stsc211579g00008 365 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 17 349 IPR044847 GO:0000976|GO:0006355|GO:0010158
Stsc211579g00008 365 Pfam Myb-like DNA-binding domain 155 206 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00008 Stsc-Chr211579 49974 55854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00008 67 221 G2-like Transcription Factor Family AT5G42630 59.615 3.13e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc211579g00008 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00008 - - adu:107495895 514.612