Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00007 ATGGAAGGATCAGAGATTTGCCATCACAACAGATCCTGGGTCGAAGACATTTATTGGAACCATTTTCAGTTCCTCCATTTTGCAAAGTTCATGCCCAGCACTTATAATCAGCACCTTGCACTTCCCAAAGCATTTTATGGTAATTTGAAGAAGAAGCTGCCAGAAAATGTGAACCTTAAAGGTCCTGGCGGTGCCCTGTGGAATATAGGGTTGACAACAAGAGACGATACCTTGTACTTCACGCATGGTTGGAAACAGTTTGTGAAAGATCACTCCTTGATGGAGAATGATTTCCTGGTCTTTAAGTTCAATGGTGAATCAACGTTCGATGTTCTAGTATTTGACGGGAAGAACTTCTGCGAAAAGGCTGCTGCTTATTTCGTTCGAAATGTCGGAAATGGGGATGCAGAAAATGGGGGTGGACGCTTGACCATGAGGAAAGACACTGAGATGGGAGAAGTTCACGCTGCTTCTAATGCTGGTGTAGAATTTGCATCGCCTAAGAAATCCGGCCGTGTTAACCGTATCCCAGTGCCAGATGCTGTGCCTGTACGCTCCGAACCTCCAACTGATGGAACTTTTAATGGCGATGTTGAATTCCCCACTCCTAAAGAAGTCGTTGATGGTGAGGCCACTGTTGATGTTGATGCTAATGGAGGAACAGTGACAGGCAAACGCACTACTGGGAAAAGGATTAGGAAGCCGACTCAAGCTTTTAACCATTTCCAGAATAAGCGGAGACCAGTAAGGGCGACAGCAAAAGCATCCAATGCAAATAATGCAAATAAGGAAGTAGTTAACGTGGTAATTGATCCAGATCCTGAACCTCCTTCTGCTGGAAAAAGTGAGGGTGGGAATTATGAGTTATATGCCTCACAGAGGAGGCCTGTCACTGAAGAAGAGATAAATAGTGCGCTTCAGATGGCAAAGGCAGCATGCACTGATGACAGCCTCTGTGTTGTTATGCGACCAACGCATGTTTATAAGAGATTCTTCGTGTCGGTCCCAAATAAGTGGATACTGCAACATATCCCTCCGCGAACTCAAGACATCATATTGCGTGTGGTTCATAGCGAGTGGCTCGCAAAATACAGCTACCATAACCCTAGAAACACCGGGGGACTCAGCGGAGGGTGGAAACGCTTCACACTGGATAACAACCTGGAAGAGTACGACGTGTGTGTGTTCAGACCCGGAGGCCTGATGAACAACACGCTGATCTTGGATGTCAACATTTTCCGAGTCGTTGAGGAGATTAAGCCTTTGACACAAGTGAGAGCTGCAGGATCATCCAAAAAGGGTGGTAAGAAAAAGGCCCTAAAGGCCATCCAAATATAA 1338 0.4589 MEGSEICHHNRSWVEDIYWNHFQFLHFAKFMPSTYNQHLALPKAFYGNLKKKLPENVNLKGPGGALWNIGLTTRDDTLYFTHGWKQFVKDHSLMENDFLVFKFNGESTFDVLVFDGKNFCEKAAAYFVRNVGNGDAENGGGRLTMRKDTEMGEVHAASNAGVEFASPKKSGRVNRIPVPDAVPVRSEPPTDGTFNGDVEFPTPKEVVDGEATVDVDANGGTVTGKRTTGKRIRKPTQAFNHFQNKRRPVRATAKASNANNANKEVVNVVIDPDPEPPSAGKSEGGNYELYASQRRPVTEEEINSALQMAKAACTDDSLCVVMRPTHVYKRFFVSVPNKWILQHIPPRTQDIILRVVHSEWLAKYSYHNPRNTGGLSGGWKRFTLDNNLEEYDVCVFRPGGLMNNTLILDVNIFRVVEEIKPLTQVRAAGSSKKGGKKKALKAIQI 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00007 445 ProSiteProfiles B3 DNA-binding domain profile. 318 416 IPR003340 GO:0003677
Stsc211579g00007 445 MobiDBLite consensus disorder prediction 166 202 - -
Stsc211579g00007 445 Gene3D - 296 418 IPR015300 -
Stsc211579g00007 445 Gene3D - 20 120 IPR015300 -
Stsc211579g00007 445 CDD B3_DNA 317 414 IPR003340 GO:0003677
Stsc211579g00007 445 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 419 IPR044837 -
Stsc211579g00007 445 SMART B3_2 318 416 IPR003340 GO:0003677
Stsc211579g00007 445 SMART B3_2 27 117 IPR003340 GO:0003677
Stsc211579g00007 445 CDD B3_DNA 26 115 IPR003340 GO:0003677
Stsc211579g00007 445 SUPERFAMILY DNA-binding pseudobarrel domain 24 116 IPR015300 -
Stsc211579g00007 445 Pfam B3 DNA binding domain 28 114 IPR003340 GO:0003677
Stsc211579g00007 445 Pfam B3 DNA binding domain 320 405 IPR003340 GO:0003677
Stsc211579g00007 445 SUPERFAMILY DNA-binding pseudobarrel domain 318 405 IPR015300 -
Stsc211579g00007 445 ProSiteProfiles B3 DNA-binding domain profile. 24 117 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00007 255 414 REM Transcription Factor Family AT4G33280 31.319 5.07e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211579g00007 B3 2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00007 - - mtr:11414255 442.195