Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00006 ATGGAAAACGATATGTTCTTCCATCAGGGATGGCCATCATTTGTGAGAGATCATCGTTTGGAATGCGGTGATCTTTTGGTTTTCAGATATGAAGGTTACCTGAATTTCACCGTGCAAGTATTTGATAAGAATAAATGTGAAAAAGTGGGATTTAATTCTGAATGCAGTCAAAGTTCAGGCATCTTTGATAACGCAAGAGGCCAAAAAAGAGATAGGAATGAGAAATCCTCCCTGGATGTTATTGTGGAAGGGGCTACAAAGAAAATGAGAGGCAACAATGACGACAACCAGGAACTTAAGCTGAGCATAGTTGGTAAAGACATATTGCAATATGAGCTGGTAAAACCTATTAGTATGATCAAAGAGAAAGAAGAAACTTCGAGAGCATGTTCAGCTAATGACATCCCATTGCCTTTTCATGTGGAAAATAGAATTGAAGATGAAGATGCTGATCAATATATTCTGAATGGTATTTCACTATCAAACTTACCAGCACATGATGAGAAAAAAGTAGCTCGATCATTTACTTCATCTTTTCCATATTTTGTAAGGATCATGAAGAGCTTCAATGTTAGCGGTTCATATACTCTGAATATCCCATATCAATTTTCTATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTTCATAATTTGAAAGGAGAGCATTGGACTGTTAATTCTGTGCCAACAACAAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCTTTTGTGCGTGGCAATAACATAAAGGTTGGAGATGTCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACTTGTTCGTATTACTGGAGCTGGAAAAGATCTACAAGACCCGGTTGCGAAGCCAGATTTAAGTAACCCGACGGCTTCAAGATATATGTCGGTGAATCCTAAAGTCAGCCCAAAAAGCACAAGAAATGTTGATCAATCAGTTAAAAAGCGGTCAAGGGTTGGTCAAGAAGCTGCTTTTTCCATTGAATTAACAAAATCTGCTAAGGCATCAAATTCTTCTAAGAAAACCGGGCTTGGCAATCGGACAAAAGCTGCAAATAAAAAGTTGGAGACAGCTGCTCAGAAGAGGCATCGTGTGGAAGATGAATTAAGCTCACAAGCTAATGCTGGCTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAACTTTGTGAAAATCATGAAGAAGTTCAATGTCAGCGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCCGCACATCTCCCTGCCTACAAAACAGAAATTGTTCTTCGAAATTTAAGAGGTGAAAGTTGGACTGTGAACTCTGTCCCAGACGCAAAAGGCAGAACGGTGCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGTGATAACGATATCAATTTCGGGGACACATGTATATTCGAACTCGTTGCTCAGGGTGAGATGCGGGTTTATATATCTGGGGTGGGAAAGGAAGGTCTTGAACATCAAAATGGTCAATTGAAGCATAACAGATTAGCCAATGTTCCATCTACCTGCTAA 1569 0.3996 MENDMFFHQGWPSFVRDHRLECGDLLVFRYEGYLNFTVQVFDKNKCEKVGFNSECSQSSGIFDNARGQKRDRNEKSSLDVIVEGATKKMRGNNDDNQELKLSIVGKDILQYELVKPISMIKEKEETSRACSANDIPLPFHVENRIEDEDADQYILNGISLSNLPAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECELLVRITGAGKDLQDPVAKPDLSNPTASRYMSVNPKVSPKSTRNVDQSVKKRSRVGQEAAFSIELTKSAKASNSSKKTGLGNRTKAANKKLETAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIVLRNLRGESWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQGEMRVYISGVGKEGLEHQNGQLKHNRLANVPSTC 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00006 522 Gene3D - 1 46 IPR015300 -
Stsc211579g00006 522 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 281 IPR044837 -
Stsc211579g00006 522 MobiDBLite consensus disorder prediction 282 321 - -
Stsc211579g00006 522 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Stsc211579g00006 522 MobiDBLite consensus disorder prediction 340 371 - -
Stsc211579g00006 522 Pfam B3 DNA binding domain 182 274 IPR003340 GO:0003677
Stsc211579g00006 522 Pfam B3 DNA binding domain 403 495 IPR003340 GO:0003677
Stsc211579g00006 522 MobiDBLite consensus disorder prediction 293 312 - -
Stsc211579g00006 522 CDD B3_DNA 180 274 IPR003340 GO:0003677
Stsc211579g00006 522 ProSiteProfiles B3 DNA-binding domain profile. 182 278 IPR003340 GO:0003677
Stsc211579g00006 522 SMART B3_2 403 499 IPR003340 GO:0003677
Stsc211579g00006 522 SMART B3_2 182 278 IPR003340 GO:0003677
Stsc211579g00006 522 Gene3D - 388 498 IPR015300 -
Stsc211579g00006 522 Gene3D - 165 277 IPR015300 -
Stsc211579g00006 522 SUPERFAMILY DNA-binding pseudobarrel domain 175 276 IPR015300 -
Stsc211579g00006 522 SUPERFAMILY DNA-binding pseudobarrel domain 3 48 IPR015300 -
Stsc211579g00006 522 CDD B3_DNA 3 42 IPR003340 GO:0003677
Stsc211579g00006 522 ProSiteProfiles B3 DNA-binding domain profile. 403 499 IPR003340 GO:0003677
Stsc211579g00006 522 Coils Coil 352 372 - -
Stsc211579g00006 522 CDD B3_DNA 401 495 IPR003340 GO:0003677
Stsc211579g00006 522 SUPERFAMILY DNA-binding pseudobarrel domain 396 497 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00006 Stsc-Chr211579 17320 19899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00006 344 502 B3 DNA Binding Superfamily AT5G42700 29.560 5.58e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211579g00006 B3 1.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00006 - - adu:107495829 972.23