Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00005 ATGGAAAACGATATGTTCTTCCATCAGGGATGGCCATCATTTGTGAGAGATCATCGTTTGGAATGCGGTGATCTTTTGGTTTTCAGATATGAAGGTTACCTGAATTTCACCGTGCAAGTATTTGATAAGAATAAATGTGAAAAAGTGGGATTTAATTCTGAATGCAGTCAAAGTTCAGGCATCTTTGATAACGCAAGAGGCCAAAAAAGAGATAGGAATGAGAAATCCTCCCTGGATGTTATTGTGGAAGGGGCTACAAAGAAAATGAGAGGCAACAATGACGACAACCAGGAACTTAAGCTGAGCATAGTTGGTAAAGACATATTGCAATATGAGCTGGTAAAACCTATTAGTATGATCAAAGAGAAAGAAGAAACTTCGAGAGCATGTTCAGCTAATGACATCCCATTGCCTTTTCATGTGGAAAATAGAATTGAAGATGAAGATGCTGATCAATATATTCTGAATGGTATTTCACTATCAAACTTACCAGCACATGATGAGAAAAAAGTAGCTCGATCATTTACTTCATCTTTTCCATATTTTGTAAGGATCATGAAGAGCTTCAATGTTAGCGGTTCATATACTCTGAATATCCCATATCAATTTTCTATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTTCATAATTTGAAAGGAGAGCATTGGACTGTTAATTCTGTGCCAACAACAAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCTTTTGTGCGTGGCAATAACATAAAGGTTGGAGATGTCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACTTGTTCGTATTACTGGAGCTGGAAAAGATCTACAAGACCCGGTTGCGAAGCCAGATTTAAGTAACCCGACGGCTTCAAGATATATGTCGGTGAATCCTAAAGTCAGCCCAAAAAGCACAAGAAATGTTGATCAATCAGTTAAAAAGCGGTCAAGGGTTGGTCAAGAAGCTGCTTTTTCCATTGAATTAACAAAATCTGCTAAGGCATCAAATTCTTCTAAGAAAACCGGGCTTGGCAATCGGACAAAAGCTGCAAATAAAAAGTTGGAGACAGCTGCTCAGAAGAGGCATCGTGTGGAAGATGAATTAAGCTCACAAGCTAATGCTGGCTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAACTTTGTGAAAATCATGAAGAAGTTCAATGTCAGCGGATCATACACTTTGGTGAGTTCTACAAAATCATTTAGCTTCCACTTTCATATGTTCTTTTATAGAGTATTTATTTGA 1317 0.3842 MENDMFFHQGWPSFVRDHRLECGDLLVFRYEGYLNFTVQVFDKNKCEKVGFNSECSQSSGIFDNARGQKRDRNEKSSLDVIVEGATKKMRGNNDDNQELKLSIVGKDILQYELVKPISMIKEKEETSRACSANDIPLPFHVENRIEDEDADQYILNGISLSNLPAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECELLVRITGAGKDLQDPVAKPDLSNPTASRYMSVNPKVSPKSTRNVDQSVKKRSRVGQEAAFSIELTKSAKASNSSKKTGLGNRTKAANKKLETAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLVSSTKSFSFHFHMFFYRVFI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00005 438 Gene3D - 1 46 IPR015300 -
Stsc211579g00005 438 MobiDBLite consensus disorder prediction 282 321 - -
Stsc211579g00005 438 SUPERFAMILY DNA-binding pseudobarrel domain 175 276 IPR015300 -
Stsc211579g00005 438 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Stsc211579g00005 438 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 320 430 IPR044837 -
Stsc211579g00005 438 MobiDBLite consensus disorder prediction 340 371 - -
Stsc211579g00005 438 MobiDBLite consensus disorder prediction 293 312 - -
Stsc211579g00005 438 Pfam B3 DNA binding domain 182 274 IPR003340 GO:0003677
Stsc211579g00005 438 SMART B3_2 182 278 IPR003340 GO:0003677
Stsc211579g00005 438 CDD B3_DNA 180 274 IPR003340 GO:0003677
Stsc211579g00005 438 ProSiteProfiles B3 DNA-binding domain profile. 182 278 IPR003340 GO:0003677
Stsc211579g00005 438 SUPERFAMILY DNA-binding pseudobarrel domain 3 48 IPR015300 -
Stsc211579g00005 438 CDD B3_DNA 3 42 IPR003340 GO:0003677
Stsc211579g00005 438 Coils Coil 352 372 - -
Stsc211579g00005 438 Gene3D - 165 277 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00005 Stsc-Chr211579 17320 19899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00005 177 278 B3 DNA Binding Superfamily AT5G42700 35.294 7.42e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211579g00005 B3 2.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00005 - - adu:107495829 766.918