Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00003 ATGAGCATAAGTGATGGTGATGATCTTGATCCAATTACTTGTCCGGTCCGTTTGTACTGTTCACAAAACAAAACCAACATTCTTGAGCTGCCTGGCTTTCCATCCTCAGTAAAACTCTCCGTCACTCGCATTAACTACACATCACAAACTTTAGAAATTTCTAATCCCAAACACTGCCTTCCGGAACTCTTTATCAAACTCAATTACTCATCATTTTATCCTTTCCGATCAATTAAAGATTCACTTGGTCCCGATACTAGTTTTGATGATGATTCTCTGGATGCAACAAACTGTACTTTCTTTGATTGCTCTTCAAGTGTGCCACCAAACATCCCCAGAACCAGAATCGCCTATGAGGTACGAGATCGGTTATCTTGCCCGATTCTCATGGCTTCTGATGACGATGATATCATGGAGTCCAACCTTGTATTCTGCAAAAAGTTGACTCGTCATGTCTTGCCAGTTTCAGCATGTTATACATCGTGGGGTCCATTATACTTGGAATGGTCTGAAAAAACTTTCAACAATGGATGCTTTCTTGCTTGCAAAGTATCCAACAAGGGCGCCAAACTCTATGAATCCATTTTTTTACCCCTTACAGGTGCAGCTTTCCTTGCGGCAATACTAGGTGTCTTATATCTTATATATAGCTATTACAGAAACAAAGGAGAAGATCAACGAAGAGTTGAAACTTTTTTGAAAGATTACATAGCACTAAACCCTACAAGATTCTCTTATGCTGATATCAAGAGAATCACAATGAAATTTAAGGACAAGTTAGGTGAAGGAGCTCACGGAGCTGTCTACAAAGGTAAATTGTCCAATCAAATTCTTGTTGCTGTCAAGATTCTCAATACTACTGAAGGAGATGGCAAAGAGTTCATAAATGAAGTTGGAACTATGGCCAAAATCCACCATGTCAATGTGGTTCGTTTGCTTGGCTATTGTGCTGACGGATCTCACCGCGCTTTAGTTTATCACTTCTTCCCAAAAGGTAATCTCGAGAGCTTCATTGCTCCGAGTGACAATGAAAGCTTTCTCGGATGGAACCAGTTGCATCAGATTGCTCTGGGCATAGCCAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTCGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTTTCACTCCAAAAATCTCTGACTTTGGTTTGGCGAAGTTATGCTCCAAGAATCGAAGTACAGTGTCCATGACAGCAGCCCGGGGAACTTTAGGTTACATGGCACCAGAAGTATTCTCCAGAAACTTCGGAAATGTATCTTACAAATCTGATATTTACAGCTATGGGATGTTATTGCTTGAGATGGTTGGAGGTAGAAAAAACACAAACGCTAGTGAAGAAAATTTTCAAGTTCTATATCCAAATTGGATCCATAGTTTGCTCGAAGGAGATGACACATATATTCCAATTGAAGATGATGGAGATTTTAGAAATGCAAAGAAACTTGCAATAGTGGGACTATGGTGCATTCAATGGCACCCGGTGCACCGTCCCTCCATGAAGAGTGTAGTTCAAATGCTTGAAGCTGAAGGAGAAGACAAACTGAAAGTACCGCCGAATCCTTTTGAATCTGCGGCTGCCATTGGTTCAAGTGCAGTTATTCCAGCAAGATGCTTGAATTTGGAATTGGAAGTGATTCCAGAAATAGATTAG 1698 0.404 MSISDGDDLDPITCPVRLYCSQNKTNILELPGFPSSVKLSVTRINYTSQTLEISNPKHCLPELFIKLNYSSFYPFRSIKDSLGPDTSFDDDSLDATNCTFFDCSSSVPPNIPRTRIAYEVRDRLSCPILMASDDDDIMESNLVFCKKLTRHVLPVSACYTSWGPLYLEWSEKTFNNGCFLACKVSNKGAKLYESIFLPLTGAAFLAAILGVLYLIYSYYRNKGEDQRRVETFLKDYIALNPTRFSYADIKRITMKFKDKLGEGAHGAVYKGKLSNQILVAVKILNTTEGDGKEFINEVGTMAKIHHVNVVRLLGYCADGSHRALVYHFFPKGNLESFIAPSDNESFLGWNQLHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNASEENFQVLYPNWIHSLLEGDDTYIPIEDDGDFRNAKKLAIVGLWCIQWHPVHRPSMKSVVQMLEAEGEDKLKVPPNPFESAAAIGSSAVIPARCLNLELEVIPEID 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00003 565 ProSiteProfiles Protein kinase domain profile. 254 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211579g00003 565 Gene3D Transferase(Phosphotransferase) domain 1 329 533 - -
Stsc211579g00003 565 FunFam PR5-like receptor kinase 329 534 - -
Stsc211579g00003 565 PANTHER RUST RESISTANCE KINASE LR10-RELATED 226 538 IPR045874 GO:0004672
Stsc211579g00003 565 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Stsc211579g00003 565 Gene3D Phosphorylase Kinase; domain 1 230 328 - -
Stsc211579g00003 565 Pfam Protein tyrosine and serine/threonine kinase 255 521 IPR001245 GO:0004672|GO:0006468
Stsc211579g00003 565 FunFam serine/threonine-protein kinase PBS1-like 222 328 - -
Stsc211579g00003 565 SUPERFAMILY Protein kinase-like (PK-like) 234 523 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00003 Stsc-Chr211579 6266 8054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00003 216 536 Receptor kinase-like Gene Family AT1G66980 48.476 1.34e-95 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211579g00003 PK_Tyr_Ser-Thr 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00003 - - adu:107495716 902.123