Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00002 ATGATGATGAGCAGAAGAGGAAATGCCTTGTTGCTGCTCATGATTTCATTGCAACAAATTTTAAGTTGCAGAGGAGGATGTAGCCCATCCTCTTGCGGCAAAATCAGCAACATAAAGCATCCTTTCCGGCTGAAGAATGATCCTGCAAGCTGCGGCGATGAGAGGTACGAGTTGTCTTGTGAGAATAACATGACAGTGTTATATCTTTTCCCGGGTAAAAGCTACGGTGTTGAAGCAATAAACTACAACAACTTCACCATCCGCCTTGTAGATCTGGGCATCTCACAGAATGACTGTTCTACCCTTCCTCGCTATTCTTTATGCACTTCCAATTTCAGTGACGCGTACGGTTTCAGCCAGATCCCGAAGGAGGTTACTGAACCATATGCATGCTTTCAAGATGTAGGTTATGGCGACAAAACTGGATTATTCAATCACGTGATTTTCTTGAACTGTAGCAATCCAATAATCAGAGATGATGACGGAAGATTCGTGGACGCTTCACATTGCATTGATGGAAAAAAAAAAGGTGATCATCATCGTCATGTTTATGCTGGTGTTGGAGGATTGAAGGTGGCTGAATTAACTCAATTAATAAGAAATGATTGCCGTGTGATGGTTGCTGCGTCCTCCGTTTTTGGTAGTCTGCACCGGAACTTGTCGTACGGCGAAATCCACCGGAGGCTCAGCTACGGATTTGAACTTTCTTGGATGCTCGGCGGTGTTTGTGCATCTGTTTGTGGGGACCTCAAAACTTGCTTTTTCAACGAAACCACTCAGAGTATCACTTGCGTAGATTACTGTCAAGGTCCAACGCAAGTTGAATGCAGAAAAGTCTCAAAGCTCCAAATCGTCGTTGAAGATTTTGCATACGGAATCTTGAAAGGATTTCGCAAAGTGGTAGGCAAAGATACTGGCGAGGCTTTGTCTAAAAAGGATGTATTATCTGCCATTAAAGTAGGAGTGTTCACAGGAAGGATTCTGATACCTTACATCGCAGTCAAATATACATTGGGTGTTATCTTTTTCTTTGCATTGTTGATCTACACACTTAGAAGAAGGCATCTATCAATTTATGGCAATATTGAAGAGTTTTTGCAACACAACACCCTCATGCCAATAAGATATTCATATAAGGAGATCAAGAAGATGACTCAAGGTTTTAAGGAAAAGTTAGGAGAAGGAGGATTCGGTGCAGTTTACAAAGGGAAGCTGGTAAGCGGGCCCTTTGTGGCCATAAAAATGTTGGGTAAAGCCAAAGGAGGTAACGGCCAAGATTTCATCAGCGAAGTTGCTACAATCGGAAGAATACACCATGCTAATGTGGTAAGGCTTATTGGATTTTGTGTCGAGGGTTCGAAACGTGCTCTGGTATATGAATTCATGCCGAATGGTTCTCTAGATAAGTATATTTTTTCCGAAGAGAATAGTGTATCTTTAACATATCAGAAGATGTTTGAGATATCTGTGGGAGTGGCACGAGGCATGGCTTATTTGCATGAAGGCTGTGACATGCAGATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGATGAGAACTTCATTCCAAAAGTCTCTGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATCGTAAGTTTGACTGCGGCGAGAGGAACAATTGGTTACATGGCTCCAGAACTGTTCTATCAAAATATTGGAGCGGTGTCTTACAAGGCTGATGTCTATAGCTTCGGAATGCTTTTGATGGAAATAGCAAGTCAGAGAAAAAATATGAATTCACATGCAGAGCATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGATCAGTTGGCTGCAAAGGAAAATTATGAGATAGAGATCGAAACTTTTAATGATGAAGAAATGAGTGAACTGGCAAAAAAGATGTTTATAACTGCATTATGGTGTATACAATTGAAGCCAAGTGATCGTCCCTCCATGAATAAAGTAGTGGAAATGTTAGAAGGAGATGTTGCAAATATTGAAATGCCCCCTAAACCTTCATTTTATCCCAATGATGTGATTCAAAGAGATTCCAAGACTGACTTTGGAGAAAGTGATTCAAACAATTCTGATGTCTCTTATAGCTTTGAAGAGGAAAGTATAACCAACCCTTTGTTAAAGTTTTCTGGTTGA 2154 0.4053 MMMSRRGNALLLLMISLQQILSCRGGCSPSSCGKISNIKHPFRLKNDPASCGDERYELSCENNMTVLYLFPGKSYGVEAINYNNFTIRLVDLGISQNDCSTLPRYSLCTSNFSDAYGFSQIPKEVTEPYACFQDVGYGDKTGLFNHVIFLNCSNPIIRDDDGRFVDASHCIDGKKKGDHHRHVYAGVGGLKVAELTQLIRNDCRVMVAASSVFGSLHRNLSYGEIHRRLSYGFELSWMLGGVCASVCGDLKTCFFNETTQSITCVDYCQGPTQVECRKVSKLQIVVEDFAYGILKGFRKVVGKDTGEALSKKDVLSAIKVGVFTGRILIPYIAVKYTLGVIFFFALLIYTLRRRHLSIYGNIEEFLQHNTLMPIRYSYKEIKKMTQGFKEKLGEGGFGAVYKGKLVSGPFVAIKMLGKAKGGNGQDFISEVATIGRIHHANVVRLIGFCVEGSKRALVYEFMPNGSLDKYIFSEENSVSLTYQKMFEISVGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEIASQRKNMNSHAEHSSQLYFPFWIYDQLAAKENYEIEIETFNDEEMSELAKKMFITALWCIQLKPSDRPSMNKVVEMLEGDVANIEMPPKPSFYPNDVIQRDSKTDFGESDSNNSDVSYSFEEESITNPLLKFSG 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00002 717 ProSiteProfiles Protein kinase domain profile. 386 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211579g00002 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Stsc211579g00002 717 FunFam PR5-like receptor kinase 462 672 - -
Stsc211579g00002 717 Pfam Protein tyrosine and serine/threonine kinase 388 660 IPR001245 GO:0004672|GO:0006468
Stsc211579g00002 717 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Stsc211579g00002 717 SUPERFAMILY Protein kinase-like (PK-like) 370 661 IPR011009 -
Stsc211579g00002 717 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Stsc211579g00002 717 PANTHER RUST RESISTANCE KINASE LR10-RELATED 357 681 IPR045874 GO:0004672
Stsc211579g00002 717 CDD STKc_IRAK 392 662 - -
Stsc211579g00002 717 Gene3D Phosphorylase Kinase; domain 1 361 461 - -
Stsc211579g00002 717 MobiDBLite consensus disorder prediction 671 703 - -
Stsc211579g00002 717 SMART serkin_6 388 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211579g00002 717 FunFam serine/threonine-protein kinase PBS1-like 359 461 - -
Stsc211579g00002 717 Gene3D Transferase(Phosphotransferase) domain 1 462 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00002 Stsc-Chr211579 2700 11282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00002 27 676 Receptor kinase-like Gene Family AT5G38260 35.143 2.06e-104 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211579g00002 PK_Tyr_Ser-Thr 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00002 - - adu:110273082 832.017