Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211579g00001 ATGCCAGCATTGTTGTTGCTGCTGATGATGAGCATAGGAATCTGCCATGGTCATGGTGATCCTGATCCTGATCCAGTTCCTTCTTGTCCCGTGCGTCTCTACTGTTCAGAAAACAAAATCAATATTCTTGAGCTGAATGGCTCTTCATCCTCAGTAAAACTCCCTGTCACCACCATTAATTACAAATCAAAAACCTTACAAGTATATGATCCCAAACACTGTTTTCCAAAAATCTTTCTCACACTCAATTACTCATCATTTCATCCTTTCCGATCCATTATACTTGATCACTATGGTTTTCGAGATCCGATGGAGCCAACAAACTTTACTTTCTTTGATTGCTCTTCAAGTGTGTCACCAGATCAGTTATCTTGCCCAATTAGCATTGCTGCTGATTACCAGGATGTCGTGGACTCCAACCTTGTATTCTGCAAAGAGTTGACTCGTTATGTCTTGCCAAGTCCAGTACAATATATACGCTCGGATCCATTTTACTTGGCATGGTCAGCAAAAACATTCAATAATGGATGCTTTCTTGCTTGCAAAGTATCCAACAAGGGCATCCAATTCTATATCTCCATTTTTTTACCCCTTACAGGTGCAGCTTTCTTTGTGGCAATACTGGGTTCCTTGTATGTTATATATAGCTATTATAGAAACAAAGGAGAAGATGAACGAAGAGTTGAAACTTTTTTGAAGGACTATGAGGCATTGAACCCAACAAGATTCTCTTATGCTGATATCAAGAGAATCACAAAGCAATTTAAGGACAAGTTAGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAACTGTCCAATCAAATTATTGTTGCTGTCAAGATTCTCAATACTACTGAAGGAGATGGCGAAGAGTTCATAAATGAAGTTGGAACTATGGCCAAAATCCACCATGTCAATGTGGTTCGTTTGCTTGGCTATTGTGCTGACGGATTTCACCGTGCATTAGTTTATCACTTCTTCCCAAAAGGTAATCTCGAGAGCTTCATTGCTCCGAGTGACAATGAAAGCTTTCTCGGATGGAACAAGATGCATCAGATTGCTCTGGGCATAGCGAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTCGACATTAATCCTCGCAATGTCTTGTTAGATGAAAGTTTCACTCCCAAAATCTCTGACTTCGGTTTGGCAAAGTTATGCTCCAAGAATAGAAGTACAGTGTCCATGACAGCAGCCCGGGGAACTTTAGGTTACATGGCACCAGAAGTTTTTTCTAGAAACTTCGGCAATGTATCTTATAAATCTGATATCTACAGCTATGGAATGTTACTGCTCGAGATGGTTGGAGGAAGAAAAAACACAAATGAGAATCAAGAAAATTTTCAAGTTCTGTATCCAGATTGGATACACAGTTTGCTCGAAGGAGATGACACATATATTCCAATTGAGGATGATGGAGATTTTAGAAAT 1476 0.3963 MPALLLLLMMSIGICHGHGDPDPDPVPSCPVRLYCSENKINILELNGSSSSVKLPVTTINYKSKTLQVYDPKHCFPKIFLTLNYSSFHPFRSIILDHYGFRDPMEPTNFTFFDCSSSVSPDQLSCPISIAADYQDVVDSNLVFCKELTRYVLPSPVQYIRSDPFYLAWSAKTFNNGCFLACKVSNKGIQFYISIFLPLTGAAFFVAILGSLYVIYSYYRNKGEDERRVETFLKDYEALNPTRFSYADIKRITKQFKDKLGEGAHGAVYKGKLSNQIIVAVKILNTTEGDGEEFINEVGTMAKIHHVNVVRLLGYCADGFHRALVYHFFPKGNLESFIAPSDNESFLGWNKMHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESFTPKISDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNENQENFQVLYPDWIHSLLEGDDTYIPIEDDGDFRN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211579g00001 492 Gene3D Transferase(Phosphotransferase) domain 1 328 486 - -
Stsc211579g00001 492 FunFam Os07g0541700 protein 328 417 - -
Stsc211579g00001 492 PANTHER RUST RESISTANCE KINASE LR10-RELATED 224 478 IPR045874 GO:0004672
Stsc211579g00001 492 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524
Stsc211579g00001 492 FunFam serine/threonine-protein kinase PBS1-like 221 327 - -
Stsc211579g00001 492 Gene3D Phosphorylase Kinase; domain 1 228 327 - -
Stsc211579g00001 492 Pfam Protein tyrosine and serine/threonine kinase 255 465 IPR001245 GO:0004672|GO:0006468
Stsc211579g00001 492 SUPERFAMILY Protein kinase-like (PK-like) 233 472 IPR011009 -
Stsc211579g00001 492 ProSiteProfiles Protein kinase domain profile. 253 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211579g00001 Stsc-Chr211579 13 1762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211579g00001 226 486 Receptor kinase-like Gene Family AT1G66980 50.373 1.14e-82 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211579g00001 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211579g00001 - - adu:107495716 758.444