LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211578g00008	ATGGCGGCAAAAAGATTTTTGGATGATTCTGATGATCGAGATCAAGATAAGCCAAACGACAAAAGGATTAGATCTAATAGACCTACTTTTGCTTCGGTGATAACCGAAGTGGTTATGGTGAAAAACTTGCAAACCCTTTTCTCAGCCTTGGAACCTTTGCTCAAAAGAGTGGTGAGTGAAGAGGTTGAAAGGGTGATGAGGCAATGCTATTCTTCATCATCATCATCAAGGTCCTTAACAAGGTCACCATCATTGAGAATCAAAGCATTTGATGAGGAGCAACCCTCATCAACCTTGCAACTAGTCTTCAGCAAGAGACTCTCCCTCCCAATCTTCACCGGAAGCCGGATCCTCGACTTCGAAGGCAACCCTATAAACATACTTCTGATGGACAAGAGTACTGGTCAAATGGTTCCAACGAGCCTCCCAAACCCAATCAAGCTAGAACTCCTCGTCCTCGACGGCGATTTCCCCCCTTCTGATAACGACAACTCTTCTTCTTCCTCGTCTTGTTCTGGTTGGAGTAGCGAACAATTTAATAGCCGAATAGTGAAGGAGAGAACAGGCAAGAGACCATTGCTTGCCGGAGAATTGAACCTGACCATGAGGGATGGCATTGCACCAACCGGGGACATTGAGTTTACTGATAATAGTAGCTGGATTCGGAGCCGGAAGTTCCGGGTTGCTGTCAGGGTGGCTCCGGGGAGTAACCACCATGGTCTCGCCATTAGGGAAGGCATGACTGAAGCCTTTGTCGTTAAGGATCACCGTGGTGAATTGTACAAAAAACATCACCCACCAATGCTAAATGACGAAGTGTGGCGGCTAGAAAAGATTGGAAAAGATGGAGCTTTTCACAAAAAATTGAGCTCAGAAGGGATCAAAACAGTGCAAGACTTTCTCAAACTATCAGTTATTGATCCTCATAGGCTAAGAAAGGTTTTGGGCATTGGGATGTCAGATAAAATGTGGGAAGTGACAATCAAGCATGCAAAGACTTGTGAAATGGGAAGCAAGATCTACATCTACAGAGGCTCTCATTTCACTATTTTTCTTAATCCAATTTGCCAATTAATTAGAGCTGATATCAATGGCCAAACATTTCCTACTAAGGAGCTTACCAATTTGAATAGGGCCTACATAGAGAAGTTGGTGAGAGAAGCATACAGTAGATGGCAAAACTTGGAGGAATTTGATGGGGTTTTGAATGATAATATTGCTTTGTTAACCCAAGGTGATGCAAATATGGAGCAATATCAAAATAATAATCATACAGGTTCGGTGGTAACATATGATAGCAACGATTATTTTGGGGACAAATCTAGTGGCAGCTACAACAACAACAAAGAACTGGGGTGCATGGAGTGGTCCCTGAATAACAGTAATCCAGGGTACACCACAGCATCATTCAGCAATGGATTTGCATATGGCTTTTCATCAGGATCTCAATCGGACGGTGATATAACACCTACTTCAGGTTGTGTCATTGACGGCGCTCAAAGGACGCATATTTAG	1515	0.4337	MAAKRFLDDSDDRDQDKPNDKRIRSNRPTFASVITEVVMVKNLQTLFSALEPLLKRVVSEEVERVMRQCYSSSSSSRSLTRSPSLRIKAFDEEQPSSTLQLVFSKRLSLPIFTGSRILDFEGNPINILLMDKSTGQMVPTSLPNPIKLELLVLDGDFPPSDNDNSSSSSSCSGWSSEQFNSRIVKERTGKRPLLAGELNLTMRDGIAPTGDIEFTDNSSWIRSRKFRVAVRVAPGSNHHGLAIREGMTEAFVVKDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSSEGIKTVQDFLKLSVIDPHRLRKVLGIGMSDKMWEVTIKHAKTCEMGSKIYIYRGSHFTIFLNPICQLIRADINGQTFPTKELTNLNRAYIEKLVREAYSRWQNLEEFDGVLNDNIALLTQGDANMEQYQNNNHTGSVVTYDSNDYFGDKSSGSYNNNKELGCMEWSLNNSNPGYTTASFSNGFAYGFSSGSQSDGDITPTSGCVIDGAQRTHI	504

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211578g00008	504	PANTHER	OS02G0177800 PROTEIN	1	469	IPR012416	GO:0005516
	Stsc211578g00008	504	Pfam	Calmodulin binding protein central domain	268	334	IPR046830	-
	Stsc211578g00008	504	Pfam	Calmodulin binding protein C-terminal domain	339	398	IPR046829	-
	Stsc211578g00008	504	Pfam	Calmodulin binding protein-like N-terminal domain	99	256	IPR046831	-
	Stsc211578g00008	504	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211578g00008	Stsc-Chr211578	37778	42523	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211578g00008	3	400	Calmodulin-binding Proteins	AT5G57580	48.130	7.56e-118	359

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211578g00008	-		-	aip:107644281	855.514