Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211578g00007 ATGTTGAAACTTGCATTAATTTTCCTCTCAGTTCTGTTTCCATTGTTGTTCCATATTTCCTTGGGCAACAACATCATCAACACCACCACTTCATCTTCAACAACTTGTGGCACAAAAAGATGCCCCAATGGACCCAACATAAGCTACCCTTTTTGGCTCTCACATGGTTCTCCCCCTCAAGAATACTGTGGCTACCCAGAATTTGGTCTAATTTGCTTAGACAATGGCTACACCATTTTCTCTCCACCACCAGGTTTATACTATTATGTCAAGGACATTGACTATGATAACCATAGCCTTAAGCTTATTGATTTTGACACCACAAACACAACATGTCCAAGGGCACTTCATGGTTTTCCACTAGGGAACTTACCTCTTTCTCATTCCTCATTGAACTTGAATCTTAGCTTTTACTATAACTGCAGTTTTGATTCACACCCTTCTGATGTTCCTGATATAACTTGTTTGAGGGAAGGATCTAAGGAGTCATTTGTGTTCTTGATGGGGAATGAGAGAAAGGGTTTTGATTGGTCTGAGAGGTGTGAGGAGAATGTTGATGTGACAGTGATGAAGGATCAGATTAGTAATAATGGTGAATATGGTTTGGTGAGGGAGTTTGGTAGGGCTATGAATGAAGGGTTTGTGCTAGAATGGGAAACTGAAGAGACTTGCAAAGAGTGTGAGGCTTCTGAGGGATATTGTGGATATAGCAGTACAAAGAAAGAGGTCTTGTGTTTCTGCAAGGATGGTACTGTAAGGACCAACAATTGTGGAGGTTTAATAGCTGGAGGAATTGGAGTGCTGCCAATAACATGCATCATACTTTACATTTTCAGACACAAACTATCACCAATCATGCCAGAAATTTTGCAGATCAGAAATGATGATCAAGATATTGAGGCCTTCATAAAGAATAATCATGGACCTTTGGCCATAAAAAGATACACTTATTCAGACATCAAGAAGATGACGAATTCTTTCGAGTCGAAACTCGGGGAAGGTGGTTATGGACAAGTATACAAAGGAATCCTTAACAATGGTGGTCCTGTGGCTGTAAAGCTTCTCAAAGCTTCCAAAGGGAATGGTGAGGAGTTCATCAATGAGGTCTTGAGTATTAGTAAAACATCTCATGTAAACATTGTTGCATTGCTCGGATTCTGTCTAGAAGGTAACAAGAAGAAAGCTCTTATCTATGAATTCATGCCGAATGGATCGCTCGAAAAGTACATTCACAACAATGATCCCGAAACCAATCCACCTTTGAGTTGGGAAAGGCTACATCGCATCGCGAAAGGGATAGCTCGAGGACTAGAGTACTTACACCGCGGTTGCAACACGAGGATTCTCCATTTCGACATAAAACCAAACAACATCCTCCTAGACAAGAACTTTAGTCCTAAAATCTCGGATTTTGGGCTAGCCAAGCTGTGCTCAAAGACACATAGCATCATCACAATGTTGGATGCCAGAGGGACCATAGGGTACATAGCTCCAGAAGTATGGAACAGACACTTTGGCGGAGTCTCCCATAAATCTGATGTATATAGTTACGGCATGATGATTCTGGAGATGGTGGGAGCGAAGCATAACAATACAAATGCTGAGGTAACTAGTCATTCTAGTGAGTTGTATTTTCCTCATTGGATATACAAGCACATTGAAGGTGAAAACAGTAGTATGGAATCATGGCAAGGTGCTAGTATAAGCAATGAGGAAAATGAGATTGTAAGGAAAATGATAATTGTAGGGTTGTGGTGCATCCAAACAATTCCATCAGAAAGACCTCCAATGAGTAGGGTCATTGAAATGCTTGAAGGAAGCATTGATCTGTTGCAGAGTCCACCAAAGCCTTTCAGTTTTTCCACAACTCAAACCAAAGTGGAATCTTGTACAACTACTTCTAGCACTGATGATGATTCATTTTCCCCTGCTGATTAG 1938 0.4087 MLKLALIFLSVLFPLLFHISLGNNIINTTTSSSTTCGTKRCPNGPNISYPFWLSHGSPPQEYCGYPEFGLICLDNGYTIFSPPPGLYYYVKDIDYDNHSLKLIDFDTTNTTCPRALHGFPLGNLPLSHSSLNLNLSFYYNCSFDSHPSDVPDITCLREGSKESFVFLMGNERKGFDWSERCEENVDVTVMKDQISNNGEYGLVREFGRAMNEGFVLEWETEETCKECEASEGYCGYSSTKKEVLCFCKDGTVRTNNCGGLIAGGIGVLPITCIILYIFRHKLSPIMPEILQIRNDDQDIEAFIKNNHGPLAIKRYTYSDIKKMTNSFESKLGEGGYGQVYKGILNNGGPVAVKLLKASKGNGEEFINEVLSISKTSHVNIVALLGFCLEGNKKKALIYEFMPNGSLEKYIHNNDPETNPPLSWERLHRIAKGIARGLEYLHRGCNTRILHFDIKPNNILLDKNFSPKISDFGLAKLCSKTHSIITMLDARGTIGYIAPEVWNRHFGGVSHKSDVYSYGMMILEMVGAKHNNTNAEVTSHSSELYFPHWIYKHIEGENSSMESWQGASISNEENEIVRKMIIVGLWCIQTIPSERPPMSRVIEMLEGSIDLLQSPPKPFSFSTTQTKVESCTTTSSTDDDSFSPAD 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211578g00007 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Stsc211578g00007 645 Pfam Wall-associated receptor kinase galacturonan-binding 36 104 IPR025287 GO:0030247
Stsc211578g00007 645 Gene3D Transferase(Phosphotransferase) domain 1 401 613 - -
Stsc211578g00007 645 ProSiteProfiles Protein kinase domain profile. 325 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211578g00007 645 Pfam Protein kinase domain 328 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211578g00007 645 SMART serkin_6 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211578g00007 645 FunFam PR5-like receptor kinase 401 615 - -
Stsc211578g00007 645 Pfam Wall-associated receptor kinase C-terminal 159 250 IPR032872 -
Stsc211578g00007 645 Gene3D Phosphorylase Kinase; domain 1 298 400 - -
Stsc211578g00007 645 SUPERFAMILY Protein kinase-like (PK-like) 309 605 IPR011009 -
Stsc211578g00007 645 MobiDBLite consensus disorder prediction 619 645 - -
Stsc211578g00007 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 295 624 IPR045874 GO:0004672
Stsc211578g00007 645 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211578g00007 Stsc-Chr211578 33263 35793 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211578g00007 38 617 Receptor kinase-like Gene Family AT5G38260 42.308 1.03e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211578g00007 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211578g00007 - - ahf:112802243 1134.01