Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211578g00001 ATGAAACAAACAACACTCTTATTCAGCCTCTGTTCCTTCTATTCTTCTCCCCTTATTCACTCGTACATAATAGTCTACTTTTCTCTTCTAACAAGGATCACTGAGTGTAGTGTGAATCCAAAGTTCGAGGCATGTGAGCCCAAAACTTGCGGTGCTACTAATAACCAAGACATAAGCTTTCCCTTCTACATCATAGCAAAACAAAGCTCCTATTGTGGACTCCCCAATTTCGGTCTCACCTGCTCTGACAACGGCTTCCCAATCGTCAATATCTCAGCAACCCTATACACTGTCCAAGATATTTTCTATAACAACCAATCACTTCGAGTGTCCATTCCTGCGCTCTCGGAACCAAGAAACACGGAATGTATTGCCCCAGTCAAAAACTACAGTGGCGAAAACCAAAGGTTCAGTGTTTCTCCGAATCAGAAGCAAGTGTTGCTGTTCTATGGCTGCGAAAACATGCAAGAGCAGAGTATTGGATGTTCAGCTGAAAACAGAACGAGATCGGTCGTGGCCATTTATGGGGATGATGTTGAGAATGTAAAGTTGGCTAAGAAGAATTGCGATGCTCCGACGATGAGCGTGACAACGGCGGAAGATGAGAAAGGAGGAATTGAAGAGGGATTGAGAAGAGGGTTTTTGATGAATTGGACGGCCAGGAATTGCAGTGAGTGCTCGAGCAGTGGTGGGAGGTGTGGGTTCGATGAAGAAGAGTATGCTTTCAGATGCTATTGTCGTGATATAAATCATATAATTGATTCAGAGAACTGTTATCCACAACCAGCAGGTGCAATAGCAGCAGCTGCAATAATGGCAGGATTGTTGAGTATTTGTTATTTTGCATACAAGTCACCAACATGGCCAGAAAGATATTGCTTTCCCACCAAAAGTAACCAAGATATTGAAACCTTCTTAAAAAATCATGGAGTTTTAACTATAAAAAGATATAAATTCTCTGAAGTGAAGAAAATGACCAAATCATTCAAAGTTAAACTCGGACAAGGTGGTTTTGGTGCTGTATACAAGGGAGAGCTACCCAATGGATCTCATGTGGCGGTCAAAATGTTGAATCCTTCCAAAGGAAATGGCCAAGAGTTTATCAATGAGGTAGCTAGCATTAGCAGAACTTCTCATGTCAATGTTGTCACTCTTCTTGGATTCTGCTTTGAAGGCGGCAAGGAAGTTCTTATTTATGAGTTTATAGCTAATGGTTCCCTTGACAAGTTCATTTACAGAAAGGAAGGAGTTGAAACTACTCCATTCTTGAGTTGGGATAAGTTGTATCGAATTTCCATAGGGATAGCTAGAGGGCTAGAGTACTTGCATAGAGGATGCAACACTCAAATTTTACATTTTGACATAAAGCCGCATAACATTCTTTTAGATGATAACTTCTGTCCCAAGATATCAGATTTCGGGCTAGCAAAGCTTTGTCCCGGGAAGGAAAGTCTTATTTCCATGTCGGATGCTAGAGGAACGATAGGGTATATAGCTCCGGAAGTATGGAATAGACATTTTGGTAAAGCTTCTCACAAATCTGATGTTTATAGTTACGGAATGATGCTTCTTGATATAGTGGGGGGAAAGAAGAACATTAATGTAGAAGGTAGTCAAACGAGCGAGGTATATTTCCCTGATTGGATATACAAAAGGCTTGAGCAAGAAGGCACTGAATTGGGAGGTGAAGATGGAGAGGTGGTAACAGAGGAAAATGAAGTGATTAAGAAAATGACAGTGGTGGGTTTATGGTGTATTCAAACAATTCCAAATGATAGACCTACAATGAGCAAAGTTGTAGAAATGTTAGAAGGCAACACAAATTCCATAGAAATGCCACCAAGACCTGCTCTGTCTTCTCCTGTAAGATCGATTGCAGAATCTTCTACTTTGTGTGCATTCTCTAAGATAAGTAGTTGA 1920 0.4083 MKQTTLLFSLCSFYSSPLIHSYIIVYFSLLTRITECSVNPKFEACEPKTCGATNNQDISFPFYIIAKQSSYCGLPNFGLTCSDNGFPIVNISATLYTVQDIFYNNQSLRVSIPALSEPRNTECIAPVKNYSGENQRFSVSPNQKQVLLFYGCENMQEQSIGCSAENRTRSVVAIYGDDVENVKLAKKNCDAPTMSVTTAEDEKGGIEEGLRRGFLMNWTARNCSECSSSGGRCGFDEEEYAFRCYCRDINHIIDSENCYPQPAGAIAAAAIMAGLLSICYFAYKSPTWPERYCFPTKSNQDIETFLKNHGVLTIKRYKFSEVKKMTKSFKVKLGQGGFGAVYKGELPNGSHVAVKMLNPSKGNGQEFINEVASISRTSHVNVVTLLGFCFEGGKEVLIYEFIANGSLDKFIYRKEGVETTPFLSWDKLYRISIGIARGLEYLHRGCNTQILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESLISMSDARGTIGYIAPEVWNRHFGKASHKSDVYSYGMMLLDIVGGKKNINVEGSQTSEVYFPDWIYKRLEQEGTELGGEDGEVVTEENEVIKKMTVVGLWCIQTIPNDRPTMSKVVEMLEGNTNSIEMPPRPALSSPVRSIAESSTLCAFSKISS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211578g00001 639 FunFam serine/threonine-protein kinase PBS1-like 296 401 - -
Stsc211578g00001 639 FunFam PR5-like receptor kinase 402 614 - -
Stsc211578g00001 639 SUPERFAMILY Protein kinase-like (PK-like) 310 604 IPR011009 -
Stsc211578g00001 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Stsc211578g00001 639 Gene3D Phosphorylase Kinase; domain 1 300 401 - -
Stsc211578g00001 639 SMART serkin_6 327 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211578g00001 639 CDD STKc_IRAK 333 605 - -
Stsc211578g00001 639 Pfam Wall-associated receptor kinase C-terminal 183 248 IPR032872 -
Stsc211578g00001 639 Pfam Wall-associated receptor kinase galacturonan-binding 45 111 IPR025287 GO:0030247
Stsc211578g00001 639 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Stsc211578g00001 639 ProSiteProfiles Protein kinase domain profile. 327 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211578g00001 639 Gene3D Transferase(Phosphotransferase) domain 1 402 613 - -
Stsc211578g00001 639 PANTHER RUST RESISTANCE KINASE LR10-RELATED 299 620 IPR045874 GO:0004672
Stsc211578g00001 639 Pfam Protein tyrosine and serine/threonine kinase 329 603 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211578g00001 Stsc-Chr211578 1935 4681 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211578g00001 21 631 Receptor kinase-like Gene Family AT5G38260 39.185 3.58e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211578g00001 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211578g00001 - - adu:107490347 942.184